HL_8T2X_004

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

8T2X|1|A1|U|133, 8T2X|1|A1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2X_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.0842

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8T2X|1|A1|C|132
8T2X|1|A1|U|133
8T2X|1|A1|U|134
8T2X|1|A1|C|135
8T2X|1|A1|G|136

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L15-A

Chain Ah

60S ribosomal protein L35-A