HL_8T2X_027

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

8T2X|1|A1|G|1268, 8T2X|1|A1|U|1269, 8T2X|1|A1|A|1270, 8T2X|1|A1|A|1271, 8T2X|1|A1|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2X_027 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3891

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T2X|1|A1|G|1266
8T2X|1|A1|U|1267
8T2X|1|A1|G|1268
8T2X|1|A1|U|1269
8T2X|1|A1|A|1270
8T2X|1|A1|A|1271
8T2X|1|A1|C|1272
8T2X|1|A1|A|1273
8T2X|1|A1|A|1274
8T2X|1|A1|C|1275

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Am

Ubiquitin-60S ribosomal protein L40