HL_8T2X_051
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- AAUUCAUUUU
- Length
- 10 nucleotides
- Bulged bases
- 8T2X|1|A1|A|2536, 8T2X|1|A1|U|2537, 8T2X|1|A1|U|2538, 8T2X|1|A1|C|2539, 8T2X|1|A1|A|2540, 8T2X|1|A1|U|2541, 8T2X|1|A1|U|2543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2X_051 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.1957
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8T2X|1|A1|A|2535
8T2X|1|A1|A|2536
8T2X|1|A1|U|2537
8T2X|1|A1|U|2538
8T2X|1|A1|C|2539
8T2X|1|A1|A|2540
8T2X|1|A1|U|2541
8T2X|1|A1|U|2542
8T2X|1|A1|U|2543
8T2X|1|A1|U|2544
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain Ag
- 60S ribosomal protein L34-A
- Chain BB
- RPS1A isoform 1
Coloring options: