HL_8T2X_092

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2X_092 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.07

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8T2X|1|B5|C|569
8T2X|1|B5|A|570
8T2X|1|B5|G|571
8T2X|1|B5|C|572
8T2X|1|B5|C|573
8T2X|1|B5|G|574

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BX

40S ribosomal protein S23-A

Chain MR

messenger RNA