HL_8T2X_107

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

AUUU

Length

4 nucleotides

Bulged bases

8T2X|1|B5|U|1362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2X_107 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1469

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T2X|1|B5|A|1360
8T2X|1|B5|U|1361
8T2X|1|B5|U|1362
8T2X|1|B5|U|1363

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A