HL_8T2X_115
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2X_115 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.1277
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8T2X|1|tA|G|31
8T2X|1|tA|C|32
8T2X|1|tA|U|33
8T2X|1|tA|C|34
8T2X|1|tA|A|35
8T2X|1|tA|U|36
8T2X|1|tA|A|37
8T2X|1|tA|A|38
8T2X|1|tA|C|39
Current chains
- Chain tA
- A site tRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BX
- 40S ribosomal protein S23-A
- Chain BZ
- RPS25A isoform 1
- Chain Be
- 40S ribosomal protein S30-A
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
- Chain MR
- messenger RNA
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