HL_8T2Y_020
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8T2Y|1|A1|U|879, 8T2Y|1|A1|A|883, 8T2Y|1|A1|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2Y_020 not in the Motif Atlas
- Homologous match to HL_8P9A_132
- Geometric discrepancy: 0.055
- The information below is about HL_8P9A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8T2Y|1|A1|A|876
8T2Y|1|A1|C|877
8T2Y|1|A1|G|878
8T2Y|1|A1|U|879
8T2Y|1|A1|G|880
8T2Y|1|A1|C|881
8T2Y|1|A1|A|882
8T2Y|1|A1|A|883
8T2Y|1|A1|A|884
8T2Y|1|A1|U|885
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AP
- 60S ribosomal protein L17-A
- Chain Aj
- 60S ribosomal protein L37-A
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