HL_8T2Y_026

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8T2Y|1|A1|U|1241, 8T2Y|1|A1|A|1244, 8T2Y|1|A1|A|1245, 8T2Y|1|A1|G|1246, 8T2Y|1|A1|U|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Y_026 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2648

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T2Y|1|A1|C|1239
8T2Y|1|A1|A|1240
8T2Y|1|A1|U|1241
8T2Y|1|A1|G|1242
8T2Y|1|A1|G|1243
8T2Y|1|A1|A|1244
8T2Y|1|A1|A|1245
8T2Y|1|A1|G|1246
8T2Y|1|A1|U|1247
8T2Y|1|A1|C|1248
8T2Y|1|A1|G|1249

Current chains

Chain A1

25S rRNA

Nearby chains