HL_8T2Z_005

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8T2Z|1|A1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_005 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.0553

The information below is about HL_8P9A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8T2Z|1|A1|U|194
8T2Z|1|A1|U|195
8T2Z|1|A1|G|196
8T2Z|1|A1|G|197
8T2Z|1|A1|A|198
8T2Z|1|A1|A|199
8T2Z|1|A1|C|200
8T2Z|1|A1|A|201

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AY

60S ribosomal protein L26-A

Chain Ae

RPL32 isoform 1