HL_8T2Z_020

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8T2Z|1|A1|U|879, 8T2Z|1|A1|A|883, 8T2Z|1|A1|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_020 not in the Motif Atlas

Homologous match to HL_8P9A_132

Geometric discrepancy: 0.0616

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8T2Z|1|A1|A|876
8T2Z|1|A1|C|877
8T2Z|1|A1|G|878
8T2Z|1|A1|U|879
8T2Z|1|A1|G|880
8T2Z|1|A1|C|881
8T2Z|1|A1|A|882
8T2Z|1|A1|A|883
8T2Z|1|A1|A|884
8T2Z|1|A1|U|885

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A

Chain Aj

60S ribosomal protein L37-A