3D structure

PDB id
8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GCGAAAGAC
Length
9 nucleotides
Bulged bases
8T2Z|1|A1|A|913, 8T2Z|1|A1|G|916
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T2Z_021 not in the Motif Atlas
Homologous match to HL_8P9A_133
Geometric discrepancy: 0.0494
The information below is about HL_8P9A_133
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87553.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8T2Z|1|A1|G|910
8T2Z|1|A1|C|911
8T2Z|1|A1|G|912
8T2Z|1|A1|A|913
8T2Z|1|A1|A|914
8T2Z|1|A1|A|915
8T2Z|1|A1|G|916
8T2Z|1|A1|A|917
8T2Z|1|A1|C|918

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain AN
60S ribosomal protein L15-A
Chain Aj
60S ribosomal protein L37-A

Coloring options:


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