HL_8T2Z_022

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

8T2Z|1|A1|C|959, 8T2Z|1|A1|A|962

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1342

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T2Z|1|A1|C|958
8T2Z|1|A1|C|959
8T2Z|1|A1|PSU|960
8T2Z|1|A1|C|961
8T2Z|1|A1|A|962
8T2Z|1|A1|G|963

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Aa

60S ribosomal protein L28

Chain Ab

RPL29 isoform 1

Chain Ao

60S ribosomal protein L42-A