HL_8T2Z_031
3D structure
- PDB id
- 8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 8T2Z|1|A1|G|1507, 8T2Z|1|A1|U|1511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2Z_031 not in the Motif Atlas
- Homologous match to HL_8C3A_032
- Geometric discrepancy: 0.3894
- The information below is about HL_8C3A_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8T2Z|1|A1|A|1506
8T2Z|1|A1|G|1507
8T2Z|1|A1|C|1508
8T2Z|1|A1|A|1509
8T2Z|1|A1|G|1510
8T2Z|1|A1|U|1511
8T2Z|1|A1|U|1512
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AP
- 60S ribosomal protein L17-A
- Chain AR
- 60S ribosomal protein L19-A
- Chain Al
- 60S ribosomal protein L39
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