HL_8T2Z_033

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUGAUUUUAUGCAGG

Length

16 nucleotides

Bulged bases

8T2Z|1|A1|A|1566, 8T2Z|1|A1|U|1567, 8T2Z|1|A1|U|1568, 8T2Z|1|A1|U|1569, 8T2Z|1|A1|U|1570, 8T2Z|1|A1|U|1572, 8T2Z|1|A1|C|1574, 8T2Z|1|A1|G|1576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_033 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3768

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8T2Z|1|A1|C|1562
8T2Z|1|A1|C|1563
8T2Z|1|A1|U|1564
8T2Z|1|A1|G|1565
8T2Z|1|A1|A|1566
8T2Z|1|A1|U|1567
8T2Z|1|A1|U|1568
8T2Z|1|A1|U|1569
8T2Z|1|A1|U|1570
8T2Z|1|A1|A|1571
8T2Z|1|A1|U|1572
8T2Z|1|A1|G|1573
8T2Z|1|A1|C|1574
8T2Z|1|A1|A|1575
8T2Z|1|A1|G|1576
8T2Z|1|A1|G|1577

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AX

60S ribosomal protein L25