HL_8T2Z_034

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8T2Z|1|A1|U|1606, 8T2Z|1|A1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_034 not in the Motif Atlas

Homologous match to HL_8P9A_146

Geometric discrepancy: 0.0696

The information below is about HL_8P9A_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T2Z|1|A1|G|1599
8T2Z|1|A1|U|1600
8T2Z|1|A1|U|1601
8T2Z|1|A1|A|1602
8T2Z|1|A1|A|1603
8T2Z|1|A1|G|1604
8T2Z|1|A1|A|1605
8T2Z|1|A1|U|1606
8T2Z|1|A1|U|1607
8T2Z|1|A1|C|1608

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AX

60S ribosomal protein L25

Chain Ag

60S ribosomal protein L34-A