HL_8T2Z_078

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

8T2Z|1|B5|U|73, 8T2Z|1|B5|U|74, 8T2Z|1|B5|U|75, 8T2Z|1|B5|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_078 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.1057

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8T2Z|1|B5|C|70
8T2Z|1|B5|A|71
8T2Z|1|B5|A|72
8T2Z|1|B5|U|73
8T2Z|1|B5|U|74
8T2Z|1|B5|U|75
8T2Z|1|B5|A|76
8T2Z|1|B5|U|77
8T2Z|1|B5|A|78
8T2Z|1|B5|C|79
8T2Z|1|B5|A|80
8T2Z|1|B5|G|81

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A