HL_8T2Z_080

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8T2Z|1|B5|C|191, 8T2Z|1|B5|U|192, 8T2Z|1|B5|U|193, 8T2Z|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2Z|1|B5|C|186
8T2Z|1|B5|G|187
8T2Z|1|B5|A|188
8T2Z|1|B5|C|189
8T2Z|1|B5|C|190
8T2Z|1|B5|C|191
8T2Z|1|B5|U|192
8T2Z|1|B5|U|193
8T2Z|1|B5|U|194
8T2Z|1|B5|G|195
8T2Z|1|B5|G|196
8T2Z|1|B5|A|197
8T2Z|1|B5|A|198
8T2Z|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A