HL_8T2Z_104

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8T2Z|1|B5|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_104 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1199

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8T2Z|1|B5|C|1309
8T2Z|1|B5|U|1310
8T2Z|1|B5|U|1311
8T2Z|1|B5|A|1312
8T2Z|1|B5|A|1313
8T2Z|1|B5|U|1314
8T2Z|1|B5|U|1315
8T2Z|1|B5|G|1316

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A