HL_8T30_019

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T30_019 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.2177

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8T30|1|A1|G|844
8T30|1|A1|G|845
8T30|1|A1|A|846
8T30|1|A1|A|847
8T30|1|A1|A|848
8T30|1|A1|C|849

Current chains

Chain A1

25S rRNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BN

40S ribosomal protein S13