HL_8T30_075

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8T30|1|A4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T30_075 not in the Motif Atlas

Homologous match to HL_8P9A_189

Geometric discrepancy: 0.1625

The information below is about HL_8P9A_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79745.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8T30|1|A4|G|124
8T30|1|A4|U|125
8T30|1|A4|A|126
8T30|1|A4|U|127
8T30|1|A4|U|128
8T30|1|A4|C|129

Current chains

Chain A4

5.8 S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AX

60S ribosomal protein L25