HL_8T30_093

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8T30|1|B5|U|779, 8T30|1|B5|A|780, 8T30|1|B5|U|781, 8T30|1|B5|U|782

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T30_093 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3786

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T30|1|B5|C|777
8T30|1|B5|G|778
8T30|1|B5|U|779
8T30|1|B5|A|780
8T30|1|B5|U|781
8T30|1|B5|U|782
8T30|1|B5|G|783

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A