3D structure

PDB id
8T3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.86 Å

Loop

Sequence
GAGUGUGUAACAACUC
Length
16 nucleotides
Bulged bases
8T3A|1|A1|A|1263, 8T3A|1|A1|G|1264, 8T3A|1|A1|U|1267, 8T3A|1|A1|G|1268, 8T3A|1|A1|U|1269, 8T3A|1|A1|A|1270, 8T3A|1|A1|A|1271, 8T3A|1|A1|C|1272, 8T3A|1|A1|A|1273
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T3A|1|A1|G|1262
8T3A|1|A1|A|1263
8T3A|1|A1|G|1264
8T3A|1|A1|U|1265
8T3A|1|A1|G|1266
8T3A|1|A1|U|1267
8T3A|1|A1|G|1268
8T3A|1|A1|U|1269
8T3A|1|A1|A|1270
8T3A|1|A1|A|1271
8T3A|1|A1|C|1272
8T3A|1|A1|A|1273
8T3A|1|A1|A|1274
8T3A|1|A1|C|1275
8T3A|1|A1|U|1276
8T3A|1|A1|C|1277

Current chains

Chain A1
25S rRNA

Nearby chains

Chain DC
Elongation factor 2

Coloring options:

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