8T3A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8T3A_001 | 1/A1/38:45 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_8T3A_002 | 1/A1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8T3A_003 | 1/A1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8T3A_004 | 1/A1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8T3A_005 | 1/A1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8T3A_006 | 1/A1/208:212 | No text annotation | geometric HL_8C3A_006 NA | |
| HL_8T3A_007 | 1/A1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8T3A_008 | 1/A1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8T3A_009 | 1/A1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8T3A_010 | 1/A1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8T3A_011 | 1/A1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8T3A_013 | 1/A1/599:604 | GNRA | homologous HL_8P9A_125 HL_34789.3 | |
| HL_8T3A_014 | 1/A1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8T3A_015 | 1/A1/687:693 | No text annotation | geometric HL_5J7L_151 NA | |
| HL_8T3A_016 | 1/A1/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8T3A_017 | 1/A1/732:737 | GNRA | homologous HL_8P9A_129 HL_34789.3 | |
| HL_8T3A_018 | 1/A1/763:768 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_8T3A_019 | 1/A1/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8T3A_020 | 1/A1/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8T3A_021 | 1/A1/910:918 | No text annotation | homologous HL_8P9A_133 HL_92598.1 | |
| HL_8T3A_022 | 1/A1/958:963 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_8T3A_023 | 1/A1/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_8T3A_024 | 1/A1/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8T3A_025 | 1/A1/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8T3A_026 | 1/A1/1262:1277 | No text annotation | ||
| HL_8T3A_027 | 1/A1/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_8T3A_028 | 1/A1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8T3A_029 | 1/A1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8T3A_030 | 1/A1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8T3A_031 | 1/A1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8T3A_033 | 1/A1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8T3A_034 | 1/A1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8T3A_035 | 1/A1/1680:1688 | Pseudoknot geometry | homologous HL_8P9A_148 HL_22758.1 | |
| HL_8T3A_036 | 1/A1/1719:1725 | No text annotation | homologous HL_8P9A_149 HL_97067.1 | |
| HL_8T3A_038 | 1/A1/1792:1796 | Mini UNCG | homologous HL_8P9A_151 HL_90436.3 | |
| HL_8T3A_039 | 1/A1/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8T3A_040 | 1/A1/1862:1868 | GNRA | homologous HL_8P9A_153 HL_34789.3 | |
| HL_8T3A_041 | 1/A1/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8T3A_042 | 1/A1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8T3A_043 | 1/A1/2135:2145 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_8T3A_044 | 1/A1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8T3A_045 | 1/A1/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_8T3A_114 | 1/A1/2252:2266 | No text annotation | ||
| HL_8T3A_047 | 1/A1/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8T3A_048 | 1/A1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8T3A_051 | 1/A1/2616:2624 | No text annotation | homologous HL_8P9A_165 HL_11974.2 | |
| HL_8T3A_052 | 1/A1/2633:2645 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_8T3A_053 | 1/A1/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8T3A_054 | 1/A1/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8T3A_055 | 1/A1/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8T3A_056 | 1/A1/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8T3A_057 | 1/A1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8T3A_058 | 1/A1/2840:2848 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_8T3A_059 | 1/A1/2897:2904 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
| HL_8T3A_060 | 1/A1/2920:2926 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_8T3A_061 | 1/A1/2963:2968 | GNRA | homologous HL_8P9A_175 HL_34789.3 | |
| HL_8T3A_062 | 1/A1/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8T3A_063 | 1/A1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8T3A_064 | 1/A1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8T3A_065 | 1/A1/3194:3197 | No text annotation | geometric HL_8C3A_004 NA | |
| HL_8T3A_066 | 1/A1/3240:3247 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8T3A_067 | 1/A1/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8T3A_068 | 1/A1/3350:3353 | Mini UNCG | homologous HL_8P9A_182 HL_90436.3 | |
| HL_8T3A_069 | 1/A3/32:45 | No text annotation | geometric HL_8C3A_228 NA | |
| HL_8T3A_070 | 1/A3/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8T3A_071 | 1/A3/88:93 | GNRA | homologous HL_8C3A_074 NA | |
| HL_8T3A_072 | 1/A4/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_8T3A_073 | 1/A4/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_8T3A_074 | 1/A4/108:114 | No text annotation | homologous HL_8P9A_188 HL_13184.2 | |
| HL_8T3A_075 | 1/A4/124:129 | No text annotation | homologous HL_8P9A_189 HL_79745.1 | |
| HL_8T3A_076 | 1/B5/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8T3A_081 | 1/B5/243:250 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8T3A_083 | 1/B5/330:338 | No text annotation | homologous HL_8P9A_197 HL_87268.2 | |
| HL_8T3A_084 | 1/B5/368:373 | No text annotation | homologous HL_8P9A_198 HL_93535.2 | |
| HL_8T3A_085 | 1/B5/393:404 | No text annotation | homologous HL_8P9A_199 HL_86432.1 | |
| HL_8T3A_087 | 1/B5/450:456 | No text annotation | homologous HL_8P9A_201 HL_89167.2 | |
| HL_8T3A_090 | 1/B5/569:574 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8T3A_091 | 1/B5/764:772 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8T3A_094 | 1/B5/900:909 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8T3A_095 | 1/B5/937:942 | GNRA | homologous HL_8P9A_210 HL_34789.3 | |
| HL_8T3A_096 | 1/B5/997:1007 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8T3A_097 | 1/B5/1055:1064 | No text annotation | ||
| HL_8T3A_098 | 1/B5/1084:1089 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8T3A_099 | 1/B5/1121:1126 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8T3A_100 | 1/B5/1188:1197 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8T3A_102 | 1/B5/1295:1302 | GNRA with extra cWH | geometric HL_7QR8_003 NA | |
| HL_8T3A_103 | 1/B5/1309:1316 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8T3A_105 | 1/B5/1396:1402 | No text annotation | ||
| HL_8T3A_107 | 1/B5/1550:1561 | No text annotation | homologous HL_8P9A_222 HL_50951.1 | |
| HL_8T3A_108 | 1/B5/1594:1602 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_8T3A_110 | 1/B5/1778:1783 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8T3A_111 | 1/tE/13:23 | tRNA D-loop | homologous HL_4V9K_033 HL_20490.1 | |
| HL_8T3A_112 | 1/tE/32:40 | No text annotation | homologous HL_4V8N_144 NA | |
| HL_8T3A_113 | 1/tE/54:62 | T-loop with 2 stacked bulged bases | homologous HL_6JXM_003 HL_33597.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8T3A_012 | No text annotation | ||
| HL_8T3A_032 | No text annotation | ||
| HL_8T3A_037 | No text annotation | ||
| HL_8T3A_046 | No text annotation | ||
| HL_8T3A_049 | No text annotation | ||
| HL_8T3A_050 | No text annotation | ||
| HL_8T3A_077 | No text annotation | ||
| HL_8T3A_078 | No text annotation | ||
| HL_8T3A_115 | No text annotation | ||
| HL_8T3A_079 | No text annotation | ||
| HL_8T3A_080 | Mini UNCG | ||
| HL_8T3A_082 | Externally structured | ||
| HL_8T3A_086 | UNCG | ||
| HL_8T3A_088 | Externally structured | ||
| HL_8T3A_089 | No text annotation | ||
| HL_8T3A_092 | No text annotation | ||
| HL_8T3A_093 | No text annotation | ||
| HL_8T3A_101 | GNRA wlth extra near cWW | ||
| HL_8T3A_104 | No text annotation | ||
| HL_8T3A_106 | GNRA | ||
| HL_8T3A_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8T3A_001 | 1/A1/7:8, 1/A4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8T3A_002 | 1/A1/13:15, 1/A4/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8T3A_003 | 1/A1/27:28, 1/A1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8T3A_004 | 1/A1/31:38, 1/A1/45:53 | tSH-tHW-tHH-tHS | homologous IL_8P9A_234 IL_93502.1 | |
| IL_8T3A_005 | 1/A1/82:89, 1/A1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8T3A_006 | 1/A1/123:124, 1/A1/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8T3A_007 | 1/A1/125:127, 1/A1/141:143 | Isolated non-canonical cWW pair | homologous IL_8P9A_237 IL_01003.3 | |
| IL_8T3A_009 | 1/A1/163:165, 1/A1/257:258 | Single stack bend | homologous IL_8P9A_238 IL_15011.2 | |
| IL_8T3A_010 | 1/A1/169:171, 1/A1/247:253 | No text annotation | ||
| IL_8T3A_011 | 1/A1/177:179, 1/A1/237:241 | No text annotation | ||
| IL_8T3A_012 | 1/A1/189:191, 1/A1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8T3A_013 | 1/A1/337:339, 1/A4/25:26 | Single bulged A | homologous IL_8P9A_242 IL_14190.2 | |
| IL_8T3A_014 | 1/A1/376:379, 1/A1/390:403 | No text annotation | geometric IL_4WF9_015 IL_44923.1 | |
| IL_8T3A_015 | 1/A1/404:410, 1/A4/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_8T3A_016 | 1/A1/429:431, 1/A1/628:630 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_71625.2 | |
| IL_8T3A_017 | 1/A1/512:513, 1/A1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_8T3A_018 | 1/A1/517:525, 1/A1/567:573 | No text annotation | homologous IL_8P9A_247 IL_06606.1 | |
| IL_8T3A_019 | 1/A1/531:538, 1/A1/553:561 | No text annotation | homologous IL_8P9A_248 IL_25001.1 | |
| IL_8T3A_020 | 1/A1/668:670, 1/A1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8T3A_021 | 1/A1/680:684, 1/A1/696:700 | No text annotation | homologous IL_8P9A_250 IL_87030.1 | |
| IL_8T3A_022 | 1/A1/725:728, 1/A1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8T3A_023 | 1/A1/752:753, 1/A1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8T3A_024 | 1/A1/755:756, 1/A1/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8T3A_025 | 1/A1/758:763, 1/A1/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_8T3A_026 | 1/A1/803:805, 1/A1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8T3A_027 | 1/A1/805:809, 1/A1/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8T3A_028 | 1/A1/828:829, 1/A1/895:897 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_8T3A_029 | 1/A1/833:834, 1/A1/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8T3A_030 | 1/A1/834:838, 1/A1/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8T3A_031 | 1/A1/869:872, 1/A1/888:890 | No text annotation | homologous IL_8P9A_259 IL_36931.2 | |
| IL_8T3A_032 | 1/A1/873:875, 1/A1/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8T3A_033 | 1/A1/907:909, 1/A1/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8T3A_229 | 1/A1/969:970, 1/A1/1111:1113 | Single stack bend | homologous IL_8CRE_038 NA | |
| IL_8T3A_035 | 1/A1/977:982, 1/A1/1101:1104 | No text annotation | ||
| IL_8T3A_036 | 1/A1/983:985, 1/A1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8T3A_037 | 1/A1/991:997, 1/A1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_8T3A_038 | 1/A1/997:998, 1/A1/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8T3A_039 | 1/A1/999:1004, 1/A1/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8T3A_040 | 1/A1/1006:1009, 1/A1/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_8T3A_041 | 1/A1/1009:1011, 1/A1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.3 | |
| IL_8T3A_042 | 1/A1/1069:1071, 1/A1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_8T3A_043 | 1/A1/1074:1076, 1/A1/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8T3A_044 | 1/A1/1120:1122, 1/A1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.3 | |
| IL_8T3A_046 | 1/A1/1167:1171, 1/A1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8T3A_047 | 1/A1/1173:1180, 1/A1/1325:1326 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_07396.1 | |
| IL_8T3A_048 | 1/A1/1180:1182, 1/A1/1324:1325 | Single bulged U | homologous IL_8P9A_278 IL_97561.3 | |
| IL_8T3A_049 | 1/A1/1187:1194, 1/A1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8T3A_050 | 1/A1/1194:1205, 1/A1/1299:1314 | No text annotation | homologous IL_8C3A_055 NA | |
| IL_8T3A_051 | 1/A1/1207:1209, 1/A1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8T3A_052 | 1/A1/1218:1227, 1/A1/1282:1287 | No text annotation | ||
| IL_8T3A_054 | 1/A1/1376:1378, 1/A1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8T3A_055 | 1/A1/1385:1387, 1/A1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8T3A_056 | 1/A1/1388:1395, 1/A1/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8T3A_057 | 1/A1/1398:1400, 1/A1/1411:1412 | Single bulged A | homologous IL_8P9A_288 IL_14190.2 | |
| IL_8T3A_058 | 1/A1/1444:1450, 1/A1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8T3A_059 | 1/A1/1501:1505, 1/A1/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_8T3A_060 | 1/A1/1532:1536, 1/A1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8T3A_061 | 1/A1/1618:1621, 1/A1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8T3A_062 | 1/A1/1623:1624, 1/A1/1820:1822 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_8T3A_063 | 1/A1/1625:1631, 1/A1/1811:1819 | No text annotation | ||
| IL_8T3A_064 | 1/A1/1645:1649, 1/A1/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_8T3A_065 | 1/A1/1661:1663, 1/A1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8T3A_066 | 1/A1/1669:1670, 1/A1/1778:1780 | Single bulged C | homologous IL_8P9A_297 IL_05642.2 | |
| IL_8T3A_067 | 1/A1/1670:1671, 1/A1/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8T3A_068 | 1/A1/1702:1707, 1/A1/1737:1743 | No text annotation | homologous IL_8P9A_300 IL_00680.1 | |
| IL_8T3A_069 | 1/A1/1711:1717, 1/A1/1727:1733 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_8T3A_070 | 1/A1/1883:1889, 1/A1/2346:2349 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_8T3A_071 | 1/A1/1895:1897, 1/A1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8T3A_072 | 1/A1/1898:1901, 1/A1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8T3A_073 | 1/A1/1898:1906, 1/A1/2333:2337 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_8T3A_074 | 1/A1/1901:1906, 1/A1/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8T3A_075 | 1/A1/1918:1923, 1/A1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8T3A_076 | 1/A1/1940:1942, 1/A1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8T3A_077 | 1/A1/1947:1948, 1/A1/2098:2101 | No text annotation | homologous IL_8P9A_309 IL_18824.1 | |
| IL_8T3A_078 | 1/A1/2128:2129, 1/A1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8T3A_079 | 1/A1/2156:2161, 1/A1/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8T3A_080 | 1/A1/2196:2199, 1/A1/2245:2246 | Minor groove platform, major groove intercalation | homologous IL_8P9A_312 IL_55206.1 | |
| IL_8T3A_081 | 1/A1/2200:2201, 1/A1/2241:2244 | Major groove intercalation | homologous IL_8P9A_313 IL_71421.2 | |
| IL_8T3A_082 | 1/A1/2204:2210, 1/A1/2235:2238 | No text annotation | ||
| IL_8T3A_083 | 1/A1/2211:2217, 1/A1/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8T3A_230 | 1/A1/2249:2252, 1/A1/2266:2267 | No text annotation | ||
| IL_8T3A_084 | 1/A1/2276:2277, 1/A1/2307:2310 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_8T3A_085 | 1/A1/2277:2288, 1/A1/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8T3A_086 | 1/A1/2391:2394, 1/A1/2986:2988 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_8T3A_087 | 1/A1/2396:2398, 1/A1/2981:2984 | No text annotation | homologous IL_8P9A_320 IL_80025.1 | |
| IL_8T3A_088 | 1/A1/2409:2411, 1/A1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8T3A_089 | 1/A1/2412:2413, 1/A1/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_8T3A_090 | 1/A1/2423:2425, 1/A1/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8T3A_092 | 1/A1/2520:2526, 1/A1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8T3A_093 | 1/A1/2614:2615, 1/A1/2625:2627 | Single bulged A | homologous IL_8P9A_325 IL_14190.2 | |
| IL_8T3A_094 | 1/A1/2666:2668, 1/A1/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_8T3A_095 | 1/A1/2718:2721, 1/A1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_8T3A_096 | 1/A1/2770:2773, 1/A1/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_8T3A_097 | 1/A1/2823:2824, 1/A1/2865:2867 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_8T3A_098 | 1/A1/2824:2826, 1/A1/2863:2865 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.3 | |
| IL_8T3A_099 | 1/A1/2826:2828, 1/A1/2862:2863 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_8T3A_100 | 1/A1/2828:2830, 1/A1/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_8T3A_101 | 1/A1/2835:2839, 1/A1/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8T3A_102 | 1/A1/2876:2877, 1/A1/2949:2951 | No text annotation | homologous IL_8P9A_334 IL_46637.2 | |
| IL_8T3A_103 | 1/A1/2879:2881, 1/A1/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8T3A_104 | 1/A1/2881:2882, 1/A1/2940:2943 | No text annotation | homologous IL_8P9A_336 IL_44609.2 | |
| IL_8T3A_105 | 1/A1/2889:2891, 1/A1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_8C3A_118 NA | |
| IL_8T3A_106 | 1/A1/2889:2892, 1/A1/2909:2914 | No text annotation | geometric IL_5TBW_475 NA | |
| IL_8T3A_107 | 1/A1/2891:2892, 1/A1/2909:2912 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_8T3A_108 | 1/A1/2918:2920, 1/A1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8T3A_109 | 1/A1/2960:2961, 1/A1/2970:2972 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_8T3A_110 | 1/A1/3004:3007, 1/A1/3139:3144 | Double sheared | homologous IL_8P9A_342 IL_58355.2 | |
| IL_8T3A_111 | 1/A1/3012:3014, 1/A1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8T3A_112 | 1/A1/3018:3025, 1/A1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8T3A_113 | 1/A1/3047:3051, 1/A1/3091:3094 | No text annotation | homologous IL_8P9A_345 IL_06671.1 | |
| IL_8T3A_114 | 1/A1/3054:3059, 1/A1/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8T3A_115 | 1/A1/3063:3064, 1/A1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8T3A_116 | 1/A1/3103:3107, 1/A1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8T3A_117 | 1/A1/3164:3166, 1/A1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8T3A_118 | 1/A1/3168:3170, 1/A1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_71625.2 | |
| IL_8T3A_119 | 1/A1/3177:3179, 1/A1/3210:3211 | Single bulged A | homologous IL_8P9A_351 IL_14190.2 | |
| IL_8T3A_120 | 1/A1/3179:3188, 1/A1/3204:3210 | No text annotation | homologous IL_8P9A_352 IL_28855.1 | |
| IL_8T3A_121 | 1/A1/3193:3194, 1/A1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8T3A_122 | 1/A1/3225:3229, 1/A1/3258:3260 | No text annotation | homologous IL_8P9A_353 IL_62925.1 | |
| IL_8T3A_123 | 1/A1/3233:3235, 1/A1/3252:3254 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_01003.3 | |
| IL_8T3A_124 | 1/A1/3235:3238, 1/A1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_8P9A_355 IL_71194.2 | |
| IL_8T3A_125 | 1/A1/3300:3303, 1/A1/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8P9A_356 IL_71194.2 | |
| IL_8T3A_126 | 1/A1/3318:3320, 1/A1/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_8T3A_127 | 1/A1/3324:3325, 1/A1/3381:3383 | Single bulged U | homologous IL_8P9A_358 IL_97561.3 | |
| IL_8T3A_128 | 1/A1/3328:3330, 1/A1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8T3A_129 | 1/A1/3332:3337, 1/A1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8T3A_130 | 1/A1/3340:3342, 1/A1/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8T3A_131 | 1/A1/3342:3345, 1/A1/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8T3A_133 | 1/A3/15:16, 1/A3/63:65 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_8T3A_134 | 1/A3/21:27, 1/A3/53:58 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8T3A_135 | 1/A3/28:29, 1/A3/49:52 | No text annotation | homologous IL_8C3A_145 NA | |
| IL_8T3A_136 | 1/A3/29:30, 1/A3/47:49 | Single stack bend | homologous IL_8C3A_146 NA | |
| IL_8T3A_137 | 1/A3/32:36, 1/A3/41:45 | No text annotation | homologous IL_8C3A_147 NA | |
| IL_8T3A_138 | 1/A3/72:80, 1/A3/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_62167.3 | |
| IL_8T3A_139 | 1/A3/84:87, 1/A3/94:96 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_8T3A_140 | 1/A4/64:66, 1/A4/93:96 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_8T3A_141 | 1/A4/68:69, 1/A4/89:91 | Single bulged U | homologous IL_8P4V_145 NA | |
| IL_8T3A_142 | 1/B5/24:26, 1/B5/600:601 | Single bulged C | homologous IL_8P9A_373 IL_05642.2 | |
| IL_8T3A_144 | 1/B5/42:48, 1/B5/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_8T3A_146 | 1/B5/58:63, 1/B5/87:89 | No text annotation | homologous IL_8P9A_378 IL_61299.6 | |
| IL_8T3A_148 | 1/B5/109:112, 1/B5/302:305 | Tandem non-canonical cWW pairs | homologous IL_8C3A_399 NA | |
| IL_8T3A_149 | 1/B5/113:116, 1/B5/300:301 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8T3A_150 | 1/B5/117:122, 1/B5/295:299 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_8T3A_157 | 1/B5/311:316, 1/B5/348:355 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8T3A_158 | 1/B5/318:323, 1/B5/345:346 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_8T3A_159 | 1/B5/363:365, 1/B5/376:381 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8T3A_162 | 1/B5/439:441, 1/B5/463:464 | Single bulged U | homologous IL_8C3A_415 NA | |
| IL_8T3A_163 | 1/B5/443:447, 1/B5/460:461 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8T3A_164 | 1/B5/447:448, 1/B5/458:460 | Single bulged G | homologous IL_8C3A_417 NA | |
| IL_8T3A_169 | 1/B5/550:557, 1/B5/587:588 | SSU/LSU pseudoknot | homologous IL_8C3A_423 NA | |
| IL_8T3A_170 | 1/B5/557:559, 1/B5/586:587 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8T3A_171 | 1/B5/562:568, 1/B5/575:583 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_8T3A_172 | 1/B5/616:622, 1/B5/1104:1105 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8T3A_173 | 1/B5/624:626, 1/B5/973:975 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8T3A_174 | 1/B5/627:631, 1/B5/968:972 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8T3A_176 | 1/B5/746:747, 1/B5/802:805 | No text annotation | homologous IL_8P9A_412 IL_73108.2 | |
| IL_8T3A_232 | 1/B5/751:759, 1/B5/791:798 | No text annotation | homologous IL_8CRE_430 IL_59049.2 | |
| IL_8T3A_180 | 1/B5/865:866, 1/B5/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_8T3A_181 | 1/B5/868:869, 1/B5/958:960 | Single bulged U | geometric IL_6UFH_004 IL_97561.3 | |
| IL_8T3A_182 | 1/B5/871:874, 1/B5/953:956 | Tandem non-canonical cWW pairs | homologous IL_8C3A_437 NA | |
| IL_8T3A_183 | 1/B5/874:878, 1/B5/950:953 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8T3A_184 | 1/B5/885:888, 1/B5/924:927 | Tandem non-canonical cWW pairs | homologous IL_8C3A_439 NA | |
| IL_8T3A_185 | 1/B5/893:899, 1/B5/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8T3A_187 | 1/B5/985:990, 1/B5/1014:1016 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8T3A_188 | 1/B5/990:994, 1/B5/1010:1014 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8T3A_189 | 1/B5/1034:1036, 1/B5/1095:1101 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8T3A_190 | 1/B5/1041:1044, 1/B5/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_8P9A_426 IL_15225.2 | |
| IL_8T3A_191 | 1/B5/1051:1053, 1/B5/1066:1067 | Single bulged U | homologous IL_8P9A_427 IL_97561.3 | |
| IL_8T3A_192 | 1/B5/1111:1118, 1/B5/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8C3A_446 NA | |
| IL_8T3A_193 | 1/B5/1146:1147, 1/B5/1630:1632 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8T3A_194 | 1/B5/1149:1151, 1/B5/1627:1628 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8T3A_195 | 1/B5/1157:1160, 1/B5/1617:1621 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8T3A_196 | 1/B5/1173:1175, 1/B5/1464:1466 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.3 | |
| IL_8T3A_197 | 1/B5/1178:1179, 1/B5/1459:1461 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8T3A_233 | 1/B5/1234:1236, 1/B5/1249:1251 | No text annotation | homologous IL_8P9A_436 IL_38565.2 | |
| IL_8T3A_200 | 1/B5/1268:1270, 1/B5/1440:1441 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8T3A_201 | 1/B5/1272:1276, 1/B5/1436:1438 | No text annotation | geometric IL_8C3A_456 NA | |
| IL_8T3A_202 | 1/B5/1272:1278, 1/B5/1430:1438 | No text annotation | geometric IL_4V88_510 NA | |
| IL_8T3A_203 | 1/B5/1276:1278, 1/B5/1430:1436 | No text annotation | homologous IL_8P9A_440 IL_34117.1 | |
| IL_8T3A_204 | 1/B5/1280:1281, 1/B5/1426:1428 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8T3A_205 | 1/B5/1290:1292, 1/B5/1323:1325 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
| IL_8T3A_206 | 1/B5/1306:1308, 1/B5/1317:1318 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8T3A_207 | 1/B5/1339:1342, 1/B5/1383:1385 | Isolated non-canonical cWW pair | homologous IL_8P9A_444 IL_01003.3 | |
| IL_8T3A_234 | 1/B5/1344:1348, 1/B5/1377:1381 | No text annotation | ||
| IL_8T3A_210 | 1/B5/1389:1391, 1/B5/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_8T3A_211 | 1/B5/1480:1487, 1/B5/1519:1527 | No text annotation | homologous IL_8C3A_466 NA | |
| IL_8T3A_212 | 1/B5/1488:1494, 1/B5/1513:1518 | No text annotation | homologous IL_8CRE_463 IL_22564.1 | |
| IL_8T3A_214 | 1/B5/1540:1545, 1/B5/1566:1571 | No text annotation | homologous IL_8C3A_507 NA | |
| IL_8T3A_215 | 1/B5/1636:1638, 1/B5/1764:1767 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
| IL_8T3A_216 | 1/B5/1638:1641, 1/B5/1760:1764 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_8T3A_217 | 1/B5/1642:1644, 1/B5/1757:1759 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8T3A_218 | 1/B5/1644:1647, 1/B5/1753:1757 | No text annotation | homologous IL_8P9A_455 IL_05553.1 | |
| IL_8T3A_219 | 1/B5/1650:1652, 1/B5/1748:1750 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8T3A_220 | 1/B5/1653:1656, 1/B5/1744:1747 | Double sheared | homologous IL_8C3A_475 NA | |
| IL_8T3A_221 | 1/B5/1656:1658, 1/B5/1743:1744 | Single bulged U | homologous IL_8P9A_458 IL_97561.3 | |
| IL_8T3A_222 | 1/B5/1665:1667, 1/B5/1734:1736 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8T3A_223 | 1/B5/1668:1672, 1/B5/1729:1733 | Triple sheared | geometric IL_9DFE_075 IL_15190.2 | |
| IL_8T3A_224 | 1/B5/1672:1674, 1/B5/1727:1729 | Isolated non-canonical cWW pair | homologous IL_8P9A_461 IL_01003.3 | |
| IL_8T3A_225 | 1/B5/1675:1678, 1/B5/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_8P9A_462 IL_71194.2 | |
| IL_8T3A_226 | 1/B5/1678:1682, 1/B5/1719:1723 | Triple sheared | homologous IL_8C3A_480 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8T3A_008 | Other IL | ||
| IL_8T3A_034 | No text annotation | ||
| IL_8T3A_045 | No text annotation | ||
| IL_8T3A_053 | No text annotation | ||
| IL_8T3A_091 | No text annotation | ||
| IL_8T3A_132 | Multiple bulged bases | ||
| IL_8T3A_143 | Isolated non-canonical cWW pair | ||
| IL_8T3A_145 | Minor groove platform | ||
| IL_8T3A_147 | No text annotation | ||
| IL_8T3A_151 | tWH-tWH-tHW-tHW | ||
| IL_8T3A_152 | No text annotation | ||
| IL_8T3A_153 | No text annotation | ||
| IL_8T3A_154 | Single bulged A | ||
| IL_8T3A_155 | No text annotation | ||
| IL_8T3A_156 | Single bulged U | ||
| IL_8T3A_160 | Isolated cWH basepair | ||
| IL_8T3A_161 | No text annotation | ||
| IL_8T3A_165 | No text annotation | ||
| IL_8T3A_166 | No text annotation | ||
| IL_8T3A_167 | No text annotation | ||
| IL_8T3A_231 | Minor groove platform | ||
| IL_8T3A_168 | Minor groove platform | ||
| IL_8T3A_175 | No text annotation | ||
| IL_8T3A_177 | Isolated non-canonical cWW pair | ||
| IL_8T3A_178 | No text annotation | ||
| IL_8T3A_179 | No text annotation | ||
| IL_8T3A_186 | Isolated cWH basepair | ||
| IL_8T3A_198 | No text annotation | ||
| IL_8T3A_199 | Tandem non-canonical cWW pairs | ||
| IL_8T3A_208 | No text annotation | ||
| IL_8T3A_235 | Multiple bulged bases | ||
| IL_8T3A_209 | No text annotation | ||
| IL_8T3A_213 | Tandem non-canonical cWW pairs | ||
| IL_8T3A_227 | No text annotation | ||
| IL_8T3A_228 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8T3A_001 | 1/A1/113:123, 1/A1/149:158, 1/A1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8T3A_002 | 1/A1/113:124, 1/A1/144:158, 1/A1/263:267 | No text annotation | ||
| J3_8T3A_003 | 1/A1/185:189, 1/A1/205:214, 1/A1/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8T3A_004 | 1/A1/340:356, 1/A1/363:368, 1/A4/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8T3A_005 | 1/A1/369:376, 1/A1/403:404, 1/A4/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_8T3A_006 | 1/A1/369:379, 1/A1/390:404, 1/A4/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8T3A_007 | 1/A1/502:503, 1/A1/588:597, 1/A1/606:611 | No text annotation | homologous J3_8P9A_048 J3_86133.1 | |
| J3_8T3A_008 | 1/A1/814:820, 1/A1/905:907, 1/A1/923:926 | No text annotation | homologous J3_8P9A_049 J3_46658.1 | |
| J3_8T3A_009 | 1/A1/829:831, 1/A1/863:867, 1/A1/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8T3A_010 | 1/A1/986:987, 1/A1/1062:1066, 1/A1/1092:1098 | No text annotation | ||
| J3_8T3A_011 | 1/A1/1479:1485, 1/A1/1857:1859, 1/A1/1871:1874 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_8T3A_012 | 1/A1/1488:1491, 1/A1/1837:1843, 1/A1/1852:1854 | No text annotation | homologous J3_8P9A_054 J3_76012.1 | |
| J3_8T3A_013 | 1/A1/1526:1531, 1/A1/1591:1595, 1/A1/1612:1613 | No text annotation | homologous J3_8C3A_052 NA | |
| J3_8T3A_043 | 1/A1/1537:1542, 1/A1/1551:1561, 1/A1/1578:1584 | No text annotation | ||
| J3_8T3A_015 | 1/A1/1631:1632, 1/A1/1641:1645, 1/A1/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8T3A_016 | 1/A1/1654:1658, 1/A1/1791:1792, 1/A1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8T3A_017 | 1/A1/2432:2435, 1/A1/2512:2517, 1/A1/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_8T3A_018 | 1/A1/2529:2532, 1/A1/2547:2563, 1/A1/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_8T3A_019 | 1/A1/2651:2653, 1/A1/2754:2765, 1/A1/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8T3A_020 | 1/A1/2664:2666, 1/A1/2690:2692, 1/A1/2701:2706 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_8T3A_021 | 1/A1/2886:2889, 1/A1/2914:2916, 1/A1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8T3A_022 | 1/A1/3171:3176, 1/A1/3212:3220, 1/A1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_8T3A_023 | 1/A1/3298:3300, 1/A1/3314:3318, 1/A1/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8T3A_024 | 1/A3/9:15, 1/A3/65:67, 1/A3/111:112 | No text annotation | ||
| J3_8T3A_025 | 1/A4/44:45, 1/A4/58:64, 1/A4/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_8T3A_026 | 1/B5/37:42, 1/B5/433:439, 1/B5/464:471 | No text annotation | ||
| J3_8T3A_027 | 1/B5/37:48, 1/B5/431:439, 1/B5/464:471 | No text annotation | ||
| J3_8T3A_028 | 1/B5/211:228, 1/B5/237:243, 1/B5/250:254 | No text annotation | ||
| J3_8T3A_029 | 1/B5/633:635, 1/B5/861:865, 1/B5/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8T3A_030 | 1/B5/633:635, 1/B5/861:866, 1/B5/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_8T3A_031 | 1/B5/760:763, 1/B5/773:775, 1/B5/785:790 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_8T3A_032 | 1/B5/881:884, 1/B5/928:936, 1/B5/943:947 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_8T3A_033 | 1/B5/1037:1039, 1/B5/1079:1083, 1/B5/1090:1094 | No text annotation | geometric J3_4V88_034 NA | |
| J3_8T3A_034 | 1/B5/1161:1164, 1/B5/1581:1587, 1/B5/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_8T3A_035 | 1/B5/1168:1171, 1/B5/1468:1470, 1/B5/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8T3A_036 | 1/B5/1180:1187, 1/B5/1198:1209, 1/B5/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8T3A_037 | 1/B5/1212:1220, 1/B5/1263:1267, 1/B5/1442:1451 | No text annotation | ||
| J3_8T3A_038 | 1/B5/1283:1288, 1/B5/1327:1332, 1/B5/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_8T3A_039 | 1/B5/1293:1294, 1/B5/1303:1306, 1/B5/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8T3A_040 | 1/B5/1336:1338, 1/B5/1386:1389, 1/B5/1412:1415 | No text annotation | geometric J3_8C3A_043 NA | |
| J3_8T3A_041 | 1/B5/1336:1338, 1/B5/1386:1391, 1/B5/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_8T3A_042 | 1/B5/1470:1474, 1/B5/1533:1540, 1/B5/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8T3A_001 | 1/A1/112:113, 1/A1/267:272, 1/A1/293:299, 1/A1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_8T3A_002 | 1/A1/185:189, 1/A1/205:208, 1/A1/212:214, 1/A1/226:231 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_8T3A_003 | 1/A1/1451:1457, 1/A1/1475:1476, 1/A1/1877:1880, 1/A1/2352:2353 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_8T3A_004 | 1/A1/1492:1496, 1/A1/1520:1525, 1/A1/1614:1615, 1/A1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_8T3A_005 | 1/A1/1674:1675, 1/A1/1693:1698, 1/A1/1747:1753, 1/A1/1772:1773 | No text annotation | ||
| J4_8T3A_006 | 1/A1/2130:2134, 1/A1/2146:2150, 1/A1/2186:2190, 1/A1/2317:2322 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8T3A_007 | 1/A1/2192:2194, 1/A1/2248:2249, 1/A1/2267:2276, 1/A1/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8T3A_008 | 1/A1/2654:2658, 1/A1/2712:2716, 1/A1/2740:2742, 1/A1/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8T3A_009 | 1/A1/3010:3012, 1/A1/3042:3043, 1/A1/3098:3100, 1/A1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_8T3A_010 | 1/B5/99:107, 1/B5/307:309, 1/B5/357:361, 1/B5/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8T3A_011 | 1/B5/622:624, 1/B5/975:980, 1/B5/1021:1032, 1/B5/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8T3A_012 | 1/tE/7:10, 1/tE/26:28, 1/tE/44:50, 1/tE/66:67 | tRNA junction | homologous J4_6UFG_001 J4_95067.1 | |
| J5_8T3A_001 | 1/A1/20:22, 1/A4/35:42, 1/A4/102:107, 1/A4/115:116, 1/A4/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8T3A_002 | 1/A1/658:663, 1/A1/799:802, 1/A1/941:944, 1/A1/1375:1376, 1/A1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8T3A_003 | 1/A1/675:678, 1/A1/702:706, 1/A1/713:721, 1/A1/749:751, 1/A1/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_8T3A_004 | 1/A1/1906:1914, 1/A1/1938:1939, 1/A1/2109:2110, 1/A1/2114:2122, 1/A1/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8T3A_005 | 1/A1/2399:2406, 1/A1/2815:2823, 1/A1/2867:2876, 1/A1/2951:2957, 1/A1/2975:2980 | No text annotation | ||
| J5_8T3A_006 | 1/A1/2416:2419, 1/A1/2611:2614, 1/A1/2627:2628, 1/A1/2650:2651, 1/A1/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_8T3A_007 | 1/B5/31:35, 1/B5/473:479, 1/B5/509:514, 1/B5/543:546, 1/B5/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8T3A_008 | 1/B5/31:35, 1/B5/473:479, 1/B5/509:516, 1/B5/536:546, 1/B5/592:595 | No text annotation | ||
| J5_8T3A_009 | 1/B5/54:57, 1/B5/90:97, 1/B5/386:388, 1/B5/409:411, 1/B5/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8T3A_010 | 1/B5/123:143, 1/B5/172:182, 1/B5/203:204, 1/B5/263:265, 1/B5/289:294 | No text annotation | ||
| J5_8T3A_011 | 1/B5/123:143, 1/B5/172:182, 1/B5/203:204, 1/B5/263:267, 1/B5/288:294 | No text annotation | ||
| J5_8T3A_012 | 1/B5/635:641, 1/B5/693:700, 1/B5/738:744, 1/B5/807:819, 1/B5/852:861 | No text annotation | ||
| J6_8T3A_001 | 1/A1/22:27, 1/A1/58:68, 1/A1/75:79, 1/A1/106:110, 1/A1/321:331, 1/A4/32:35 | No text annotation | ||
| J6_8T3A_002 | 1/A1/2416:2419, 1/A1/2611:2614, 1/A1/2627:2628, 1/A1/2650:2653, 1/A1/2754:2765, 1/A1/2793:2804 | No text annotation | ||
| J7_8T3A_001 | 1/A1/949:956, 1/A1/965:968, 1/A1/1114:1117, 1/A1/1141:1146, 1/A1/1157:1161, 1/A1/1338:1339, 1/A1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8T3A_014 | No text annotation |
Coloring options: