HL_8T3A_046
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GGGAGUAAC(PSU)A(PSU)GAC(PSU)C(PSU)C
- Length
- 19 nucleotides
- Bulged bases
- 8T3A|1|A1|A|2256
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3A|1|A1|G|2249
8T3A|1|A1|G|2250
8T3A|1|A1|G|2251
8T3A|1|A1|A|2252
8T3A|1|A1|G|2253
8T3A|1|A1|U|2254
8T3A|1|A1|A|2255
8T3A|1|A1|A|2256
8T3A|1|A1|C|2257
8T3A|1|A1|PSU|2258
8T3A|1|A1|A|2259
8T3A|1|A1|PSU|2260
8T3A|1|A1|G|2261
8T3A|1|A1|A|2262
8T3A|1|A1|C|2263
8T3A|1|A1|PSU|2264
8T3A|1|A1|C|2265
8T3A|1|A1|PSU|2266
8T3A|1|A1|C|2267
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain C5
- LSO2 isoform 1
- Chain DC
- Elongation factor 2
Coloring options: