HL_8T3A_079

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8T3A|1|B5|C|190, 8T3A|1|B5|C|191, 8T3A|1|B5|U|192, 8T3A|1|B5|U|193, 8T3A|1|B5|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3A_079 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3316

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8T3A|1|B5|C|186
8T3A|1|B5|G|187
8T3A|1|B5|A|188
8T3A|1|B5|C|189
8T3A|1|B5|C|190
8T3A|1|B5|C|191
8T3A|1|B5|U|192
8T3A|1|B5|U|193
8T3A|1|B5|U|194
8T3A|1|B5|G|195
8T3A|1|B5|G|196
8T3A|1|B5|A|197
8T3A|1|B5|A|198
8T3A|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A