HL_8T3A_087

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8T3A|1|B5|A|452, 8T3A|1|B5|U|453, 8T3A|1|B5|U|454, 8T3A|1|B5|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3A_087 not in the Motif Atlas

Homologous match to HL_8P9A_201

Geometric discrepancy: 0.3226

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8T3A|1|B5|U|450
8T3A|1|B5|A|451
8T3A|1|B5|A|452
8T3A|1|B5|U|453
8T3A|1|B5|U|454
8T3A|1|B5|C|455
8T3A|1|B5|A|456

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A