HL_8T3A_093

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUUCUAUUUUGUUGGUUUCUAGGAC

Length

25 nucleotides

Bulged bases

8T3A|1|B5|U|825, 8T3A|1|B5|U|828, 8T3A|1|B5|U|832, 8T3A|1|B5|G|834, 8T3A|1|B5|U|835, 8T3A|1|B5|A|847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3A|1|B5|G|824
8T3A|1|B5|U|825
8T3A|1|B5|U|826
8T3A|1|B5|C|827
8T3A|1|B5|U|828
8T3A|1|B5|A|829
8T3A|1|B5|U|830
8T3A|1|B5|U|831
8T3A|1|B5|U|832
8T3A|1|B5|U|833
8T3A|1|B5|G|834
8T3A|1|B5|U|835
8T3A|1|B5|U|836
8T3A|1|B5|G|837
8T3A|1|B5|G|838
8T3A|1|B5|U|839
8T3A|1|B5|U|840
8T3A|1|B5|U|841
8T3A|1|B5|C|842
8T3A|1|B5|U|843
8T3A|1|B5|A|844
8T3A|1|B5|G|845
8T3A|1|B5|G|846
8T3A|1|B5|A|847
8T3A|1|B5|C|848

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain BL

40S ribosomal protein S11-A