HL_8T3A_111

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8T3A|1|tE|C|16, 8T3A|1|tE|G|19, 8T3A|1|tE|G|20, 8T3A|1|tE|U|21, 8T3A|1|tE|A|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3A_111 not in the Motif Atlas

Homologous match to HL_4V9K_033

Geometric discrepancy: 0.1677

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8T3A|1|tE|C|13
8T3A|1|tE|A|14
8T3A|1|tE|G|15
8T3A|1|tE|C|16
8T3A|1|tE|C|17
8T3A|1|tE|U|18|||A
8T3A|1|tE|G|19
8T3A|1|tE|G|20
8T3A|1|tE|U|21
8T3A|1|tE|A|22
8T3A|1|tE|G|23

Current chains

Chain tE

E site tRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1