HL_8T3B_066

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8T3B|1|A1|G|3116, 8T3B|1|A1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3B_066 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0847

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8T3B|1|A1|C|3110
8T3B|1|A1|U|3111
8T3B|1|A1|G|3112
8T3B|1|A1|A|3113
8T3B|1|A1|A|3114
8T3B|1|A1|C|3115
8T3B|1|A1|G|3116
8T3B|1|A1|C|3117
8T3B|1|A1|C|3118
8T3B|1|A1|U|3119
8T3B|1|A1|C|3120
8T3B|1|A1|U|3121
8T3B|1|A1|A|3122
8T3B|1|A1|A|3123
8T3B|1|A1|G|3124

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L16-A

Chain Am

Ubiquitin-60S ribosomal protein L40