8T3B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8T3B_001 | 1/A1/38:45 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_8T3B_002 | 1/A1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8T3B_003 | 1/A1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8T3B_004 | 1/A1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8T3B_005 | 1/A1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8T3B_006 | 1/A1/208:212 | No text annotation | geometric HL_4V9F_011 HL_75660.6 | |
| HL_8T3B_007 | 1/A1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8T3B_008 | 1/A1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8T3B_009 | 1/A1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8T3B_010 | 1/A1/357:362 | GNRA | homologous HL_8P9A_122 HL_34789.1 | |
| HL_8T3B_011 | 1/A1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8T3B_013 | 1/A1/599:604 | GNRA | homologous HL_8P9A_125 HL_34789.1 | |
| HL_8T3B_014 | 1/A1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8T3B_015 | 1/A1/687:693 | No text annotation | geometric HL_5J7L_151 NA | |
| HL_8T3B_016 | 1/A1/707:712 | GNRA | homologous HL_8P9A_128 HL_34789.1 | |
| HL_8T3B_017 | 1/A1/732:737 | GNRA | homologous HL_8P9A_129 HL_34789.1 | |
| HL_8T3B_018 | 1/A1/763:768 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_8T3B_019 | 1/A1/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8T3B_020 | 1/A1/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8T3B_021 | 1/A1/910:918 | No text annotation | homologous HL_8P9A_133 HL_79004.1 | |
| HL_8T3B_022 | 1/A1/958:963 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_8T3B_023 | 1/A1/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_8T3B_024 | 1/A1/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8T3B_025 | 1/A1/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8T3B_028 | 1/A1/1347:1357 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_8T3B_029 | 1/A1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8T3B_030 | 1/A1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8T3B_031 | 1/A1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8T3B_032 | 1/A1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8T3B_034 | 1/A1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8T3B_035 | 1/A1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8T3B_036 | 1/A1/1680:1688 | Pseudoknot geometry | homologous HL_8P9A_148 HL_68642.1 | |
| HL_8T3B_037 | 1/A1/1719:1725 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_8T3B_039 | 1/A1/1792:1796 | Mini UNCG | homologous HL_8P9A_151 HL_90436.1 | |
| HL_8T3B_040 | 1/A1/1844:1851 | No text annotation | homologous HL_8P9A_152 HL_28592.1 | |
| HL_8T3B_041 | 1/A1/1862:1868 | GNRA | homologous HL_8P9A_153 HL_34789.1 | |
| HL_8T3B_042 | 1/A1/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8T3B_043 | 1/A1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8T3B_044 | 1/A1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8T3B_045 | 1/A1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8T3B_046 | 1/A1/2220:2225 | GNRA | homologous HL_8P9A_159 HL_34789.1 | |
| HL_8T3B_047 | 1/A1/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8T3B_048 | 1/A1/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8T3B_049 | 1/A1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8T3B_053 | 1/A1/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8T3B_054 | 1/A1/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_8T3B_055 | 1/A1/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8T3B_056 | 1/A1/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8T3B_057 | 1/A1/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8T3B_058 | 1/A1/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8T3B_059 | 1/A1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8T3B_060 | 1/A1/2840:2848 | No text annotation | homologous HL_8P9A_172 HL_52011.1 | |
| HL_8T3B_061 | 1/A1/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8T3B_062 | 1/A1/2920:2926 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_8T3B_063 | 1/A1/2963:2968 | GNRA | homologous HL_8P9A_175 HL_34789.1 | |
| HL_8T3B_064 | 1/A1/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8T3B_065 | 1/A1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8T3B_066 | 1/A1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8T3B_068 | 1/A1/3240:3247 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8T3B_069 | 1/A1/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8T3B_071 | 1/A3/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8T3B_072 | 1/A3/88:93 | GNRA | homologous HL_8P9A_185 HL_34789.1 | |
| HL_8T3B_073 | 1/A4/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_8T3B_074 | 1/A4/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_8T3B_075 | 1/A4/108:114 | No text annotation | homologous HL_8C3A_076 NA | |
| HL_8T3B_076 | 1/A4/124:129 | No text annotation | homologous HL_8C3A_077 NA | |
| HL_8T3B_077 | 1/B5/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8T3B_084 | 1/B5/330:338 | No text annotation | homologous HL_8P9A_197 HL_36455.1 | |
| HL_8T3B_085 | 1/B5/368:373 | No text annotation | homologous HL_8P9A_198 HL_93535.2 | |
| HL_8T3B_086 | 1/B5/393:404 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8T3B_088 | 1/B5/450:456 | No text annotation | homologous HL_8P9A_201 HL_89167.1 | |
| HL_8T3B_090 | 1/B5/520:532 | No text annotation | homologous HL_8C3A_205 NA | |
| HL_8T3B_091 | 1/B5/569:574 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8T3B_092 | 1/B5/764:772 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8T3B_095 | 1/B5/900:909 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8T3B_096 | 1/B5/937:942 | GNRA | homologous HL_8P9A_210 HL_34789.1 | |
| HL_8T3B_097 | 1/B5/997:1007 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8T3B_099 | 1/B5/1084:1089 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8T3B_100 | 1/B5/1121:1126 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8T3B_101 | 1/B5/1188:1197 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8T3B_103 | 1/B5/1295:1302 | GNRA with extra cWH | geometric HL_7QR8_003 NA | |
| HL_8T3B_104 | 1/B5/1309:1316 | T-loop related | homologous HL_8P9A_218 HL_63894.1 | |
| HL_8T3B_106 | 1/B5/1396:1402 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_8T3B_117 | 1/B5/1549:1562 | No text annotation | ||
| HL_8T3B_109 | 1/B5/1594:1602 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_8T3B_111 | 1/B5/1778:1783 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8T3B_118 | 1/EC/6784:6812 | No text annotation | ||
| HL_8T3B_115 | 1/EC/6903:6910 | No text annotation | geometric HL_4V84_034 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8T3B_012 | No text annotation | ||
| HL_8T3B_026 | No text annotation | ||
| HL_8T3B_027 | No text annotation | ||
| HL_8T3B_033 | No text annotation | ||
| HL_8T3B_038 | No text annotation | ||
| HL_8T3B_050 | No text annotation | ||
| HL_8T3B_051 | No text annotation | ||
| HL_8T3B_052 | No text annotation | ||
| HL_8T3B_067 | No text annotation | ||
| HL_8T3B_070 | Mini UNCG | ||
| HL_8T3B_078 | No text annotation | ||
| HL_8T3B_079 | No text annotation | ||
| HL_8T3B_080 | No text annotation | ||
| HL_8T3B_081 | No text annotation | ||
| HL_8T3B_082 | T-loop with 1 bulged base | ||
| HL_8T3B_083 | Mini UNCG | ||
| HL_8T3B_087 | UNCG | ||
| HL_8T3B_089 | No text annotation | ||
| HL_8T3B_093 | No text annotation | ||
| HL_8T3B_094 | No text annotation | ||
| HL_8T3B_098 | No text annotation | ||
| HL_8T3B_102 | Anticodon loop related | ||
| HL_8T3B_105 | No text annotation | ||
| HL_8T3B_107 | GNRA | ||
| HL_8T3B_108 | No text annotation | ||
| HL_8T3B_110 | No text annotation | ||
| HL_8T3B_112 | No text annotation | ||
| HL_8T3B_113 | No text annotation | ||
| HL_8T3B_114 | No text annotation | ||
| HL_8T3B_116 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8T3B_001 | 1/A1/7:8, 1/A4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8T3B_002 | 1/A1/13:15, 1/A4/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8T3B_003 | 1/A1/27:28, 1/A1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8T3B_004 | 1/A1/31:38, 1/A1/45:53 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_8T3B_005 | 1/A1/82:89, 1/A1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_8T3B_006 | 1/A1/123:124, 1/A1/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8T3B_007 | 1/A1/125:127, 1/A1/141:143 | Isolated non-canonical cWW pair | homologous IL_8P9A_237 IL_01003.1 | |
| IL_8T3B_008 | 1/A1/163:165, 1/A1/257:258 | Single stack bend | homologous IL_8P9A_238 IL_15011.1 | |
| IL_8T3B_009 | 1/A1/169:171, 1/A1/247:253 | No text annotation | ||
| IL_8T3B_239 | 1/A1/176:178, 1/A1/238:242 | No text annotation | ||
| IL_8T3B_011 | 1/A1/189:191, 1/A1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8T3B_012 | 1/A1/337:339, 1/A4/25:26 | Single bulged A | homologous IL_8P9A_242 IL_14190.1 | |
| IL_8T3B_013 | 1/A1/376:379, 1/A1/390:403 | No text annotation | geometric IL_4WF9_015 IL_44923.1 | |
| IL_8T3B_014 | 1/A1/404:410, 1/A4/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_8T3B_015 | 1/A1/429:431, 1/A1/628:630 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_71625.1 | |
| IL_8T3B_016 | 1/A1/435:495, 1/A1/618:624 | No text annotation | ||
| IL_8T3B_017 | 1/A1/512:513, 1/A1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_8T3B_018 | 1/A1/517:525, 1/A1/567:573 | No text annotation | homologous IL_8P9A_247 IL_52712.1 | |
| IL_8T3B_019 | 1/A1/531:538, 1/A1/553:561 | No text annotation | homologous IL_8P9A_248 IL_25001.1 | |
| IL_8T3B_020 | 1/A1/668:670, 1/A1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8T3B_021 | 1/A1/680:684, 1/A1/696:700 | No text annotation | homologous IL_8P9A_250 IL_87030.1 | |
| IL_8T3B_022 | 1/A1/725:728, 1/A1/741:745 | UAA/GAN variation | homologous IL_8P9A_251 IL_45790.1 | |
| IL_8T3B_023 | 1/A1/752:753, 1/A1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8T3B_024 | 1/A1/755:756, 1/A1/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8T3B_025 | 1/A1/758:763, 1/A1/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_8T3B_026 | 1/A1/803:805, 1/A1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8T3B_027 | 1/A1/805:809, 1/A1/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8T3B_028 | 1/A1/828:829, 1/A1/895:897 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_8T3B_029 | 1/A1/833:834, 1/A1/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8T3B_030 | 1/A1/834:838, 1/A1/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8T3B_031 | 1/A1/869:872, 1/A1/888:890 | No text annotation | homologous IL_8P9A_259 IL_36931.1 | |
| IL_8T3B_032 | 1/A1/873:875, 1/A1/886:887 | Single bulged U | homologous IL_8P9A_260 IL_97561.1 | |
| IL_8T3B_033 | 1/A1/907:909, 1/A1/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8T3B_034 | 1/A1/969:970, 1/A1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8T3B_035 | 1/A1/977:982, 1/A1/1101:1104 | No text annotation | ||
| IL_8T3B_036 | 1/A1/983:985, 1/A1/1099:1100 | Single bulged G | homologous IL_8P9A_265 IL_28408.1 | |
| IL_8T3B_037 | 1/A1/991:997, 1/A1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_8T3B_038 | 1/A1/997:998, 1/A1/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8T3B_039 | 1/A1/999:1004, 1/A1/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8T3B_040 | 1/A1/1006:1009, 1/A1/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.1 | |
| IL_8T3B_041 | 1/A1/1009:1011, 1/A1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_8T3B_042 | 1/A1/1069:1071, 1/A1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8P9A_272 IL_01003.1 | |
| IL_8T3B_043 | 1/A1/1074:1076, 1/A1/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8T3B_044 | 1/A1/1120:1122, 1/A1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8T3B_045 | 1/A1/1167:1171, 1/A1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8T3B_046 | 1/A1/1173:1180, 1/A1/1325:1326 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_07396.1 | |
| IL_8T3B_047 | 1/A1/1180:1182, 1/A1/1324:1325 | Single bulged U | homologous IL_8P9A_278 IL_97561.1 | |
| IL_8T3B_048 | 1/A1/1187:1194, 1/A1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8T3B_049 | 1/A1/1194:1205, 1/A1/1299:1314 | No text annotation | homologous IL_8C3A_055 NA | |
| IL_8T3B_050 | 1/A1/1207:1209, 1/A1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8T3B_051 | 1/A1/1218:1228, 1/A1/1281:1287 | No text annotation | ||
| IL_8T3B_054 | 1/A1/1376:1378, 1/A1/1428:1431 | No text annotation | homologous IL_8P9A_285 IL_42997.4 | |
| IL_8T3B_055 | 1/A1/1385:1387, 1/A1/1420:1421 | Single bulged A | homologous IL_8P9A_286 IL_14190.1 | |
| IL_8T3B_056 | 1/A1/1388:1395, 1/A1/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8T3B_057 | 1/A1/1398:1400, 1/A1/1411:1412 | Single bulged A | homologous IL_8P9A_288 IL_14190.1 | |
| IL_8T3B_058 | 1/A1/1444:1450, 1/A1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8T3B_059 | 1/A1/1501:1505, 1/A1/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_8T3B_060 | 1/A1/1532:1536, 1/A1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8T3B_061 | 1/A1/1618:1621, 1/A1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8T3B_062 | 1/A1/1623:1624, 1/A1/1820:1822 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_8T3B_063 | 1/A1/1625:1631, 1/A1/1811:1819 | No text annotation | ||
| IL_8T3B_064 | 1/A1/1645:1649, 1/A1/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_8T3B_065 | 1/A1/1661:1663, 1/A1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8T3B_066 | 1/A1/1669:1670, 1/A1/1778:1780 | Single bulged C | homologous IL_8P9A_297 IL_05642.1 | |
| IL_8T3B_067 | 1/A1/1670:1671, 1/A1/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8T3B_068 | 1/A1/1702:1707, 1/A1/1737:1743 | No text annotation | homologous IL_8P9A_300 IL_00680.1 | |
| IL_8T3B_069 | 1/A1/1711:1717, 1/A1/1727:1733 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_8T3B_070 | 1/A1/1883:1889, 1/A1/2346:2349 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_8T3B_071 | 1/A1/1895:1897, 1/A1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8T3B_072 | 1/A1/1898:1901, 1/A1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_8T3B_073 | 1/A1/1898:1906, 1/A1/2333:2337 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_8T3B_074 | 1/A1/1901:1906, 1/A1/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8T3B_075 | 1/A1/1918:1923, 1/A1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8T3B_076 | 1/A1/1940:1942, 1/A1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8T3B_077 | 1/A1/1947:1948, 1/A1/2098:2101 | No text annotation | homologous IL_8P9A_309 IL_18824.1 | |
| IL_8T3B_078 | 1/A1/2128:2129, 1/A1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8T3B_079 | 1/A1/2156:2161, 1/A1/2173:2180 | No text annotation | homologous IL_8P9A_311 IL_14684.1 | |
| IL_8T3B_080 | 1/A1/2196:2199, 1/A1/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8T3B_081 | 1/A1/2200:2201, 1/A1/2241:2244 | Major groove intercalation | homologous IL_8P9A_313 IL_71421.1 | |
| IL_8T3B_082 | 1/A1/2204:2206, 1/A1/2237:2238 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8T3B_083 | 1/A1/2206:2210, 1/A1/2235:2237 | No text annotation | ||
| IL_8T3B_084 | 1/A1/2211:2217, 1/A1/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8T3B_085 | 1/A1/2276:2277, 1/A1/2307:2310 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_8T3B_086 | 1/A1/2277:2288, 1/A1/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8T3B_087 | 1/A1/2391:2394, 1/A1/2986:2988 | No text annotation | homologous IL_8P9A_319 IL_75527.1 | |
| IL_8T3B_088 | 1/A1/2396:2398, 1/A1/2981:2984 | No text annotation | homologous IL_8P9A_320 IL_80025.1 | |
| IL_8T3B_089 | 1/A1/2409:2411, 1/A1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8T3B_090 | 1/A1/2412:2413, 1/A1/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_8T3B_091 | 1/A1/2423:2425, 1/A1/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8T3B_092 | 1/A1/2444:2447, 1/A1/2499:2503 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.1 | |
| IL_8T3B_096 | 1/A1/2520:2526, 1/A1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8T3B_097 | 1/A1/2614:2615, 1/A1/2625:2627 | Single bulged A | homologous IL_8P9A_325 IL_14190.1 | |
| IL_8T3B_098 | 1/A1/2666:2668, 1/A1/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_8T3B_099 | 1/A1/2718:2721, 1/A1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_8T3B_100 | 1/A1/2770:2773, 1/A1/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_8T3B_101 | 1/A1/2823:2824, 1/A1/2865:2867 | Major groove platform | homologous IL_8P9A_329 IL_48076.7 | |
| IL_8T3B_102 | 1/A1/2824:2826, 1/A1/2863:2865 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.1 | |
| IL_8T3B_103 | 1/A1/2826:2828, 1/A1/2862:2863 | No text annotation | homologous IL_8P9A_331 IL_46637.1 | |
| IL_8T3B_104 | 1/A1/2828:2830, 1/A1/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_8T3B_105 | 1/A1/2835:2839, 1/A1/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8T3B_240 | 1/A1/2876:2877, 1/A1/2949:2951 | No text annotation | homologous IL_8P9A_334 IL_46637.1 | |
| IL_8T3B_107 | 1/A1/2879:2881, 1/A1/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8T3B_108 | 1/A1/2881:2882, 1/A1/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8T3B_109 | 1/A1/2889:2891, 1/A1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_8T3B_110 | 1/A1/2889:2892, 1/A1/2909:2914 | No text annotation | geometric IL_8C3A_486 NA | |
| IL_8T3B_111 | 1/A1/2891:2892, 1/A1/2909:2912 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_8T3B_112 | 1/A1/2918:2920, 1/A1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8T3B_113 | 1/A1/2960:2961, 1/A1/2970:2972 | Single bulged A | geometric IL_1GID_009 NA | |
| IL_8T3B_114 | 1/A1/3004:3007, 1/A1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8T3B_115 | 1/A1/3012:3014, 1/A1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.1 | |
| IL_8T3B_116 | 1/A1/3018:3025, 1/A1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8T3B_117 | 1/A1/3047:3051, 1/A1/3091:3094 | No text annotation | homologous IL_8P9A_345 IL_06671.1 | |
| IL_8T3B_118 | 1/A1/3054:3059, 1/A1/3084:3088 | No text annotation | homologous IL_8P9A_346 IL_98200.1 | |
| IL_8T3B_119 | 1/A1/3063:3064, 1/A1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8T3B_120 | 1/A1/3103:3107, 1/A1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8T3B_121 | 1/A1/3164:3166, 1/A1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8T3B_122 | 1/A1/3168:3170, 1/A1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_01003.1 | |
| IL_8T3B_123 | 1/A1/3177:3179, 1/A1/3210:3211 | Single bulged A | homologous IL_8P9A_351 IL_14190.1 | |
| IL_8T3B_124 | 1/A1/3179:3188, 1/A1/3204:3210 | No text annotation | homologous IL_8P9A_352 IL_28855.1 | |
| IL_8T3B_125 | 1/A1/3193:3194, 1/A1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8T3B_126 | 1/A1/3225:3229, 1/A1/3258:3260 | No text annotation | homologous IL_8P9A_353 IL_62925.1 | |
| IL_8T3B_127 | 1/A1/3233:3235, 1/A1/3252:3254 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_01003.1 | |
| IL_8T3B_128 | 1/A1/3235:3238, 1/A1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_8P9A_355 IL_71194.1 | |
| IL_8T3B_129 | 1/A1/3300:3303, 1/A1/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8P9A_356 IL_71194.1 | |
| IL_8T3B_130 | 1/A1/3318:3320, 1/A1/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_8T3B_131 | 1/A1/3324:3325, 1/A1/3381:3383 | Single bulged U | homologous IL_8P9A_358 IL_97561.1 | |
| IL_8T3B_132 | 1/A1/3328:3330, 1/A1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8T3B_133 | 1/A1/3332:3337, 1/A1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8T3B_134 | 1/A1/3340:3342, 1/A1/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8T3B_135 | 1/A1/3342:3345, 1/A1/3360:3363 | Double sheared; A in syn | homologous IL_8P9A_362 IL_58355.1 | |
| IL_8T3B_137 | 1/A3/15:16, 1/A3/63:65 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_8T3B_138 | 1/A3/21:27, 1/A3/53:58 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8T3B_139 | 1/A3/28:29, 1/A3/49:52 | No text annotation | homologous IL_8P9A_366 IL_87975.1 | |
| IL_8T3B_140 | 1/A3/29:30, 1/A3/47:49 | Single stack bend | homologous IL_8C3A_146 NA | |
| IL_8T3B_141 | 1/A3/32:36, 1/A3/41:45 | No text annotation | homologous IL_9DFE_113 IL_58103.12 | |
| IL_8T3B_142 | 1/A3/72:80, 1/A3/100:106 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.1 | |
| IL_8T3B_143 | 1/A3/84:87, 1/A3/94:96 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_8T3B_144 | 1/A4/64:66, 1/A4/93:96 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_68118.1 | |
| IL_8T3B_145 | 1/A4/68:69, 1/A4/89:91 | Single bulged U | homologous IL_8P4V_145 NA | |
| IL_8T3B_146 | 1/B5/24:26, 1/B5/600:601 | Single bulged C | homologous IL_8C3A_392 NA | |
| IL_8T3B_147 | 1/B5/35:37, 1/B5/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_8T3B_148 | 1/B5/37:41, 1/B5/466:471 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8T3B_149 | 1/B5/42:48, 1/B5/431:433 | No text annotation | geometric IL_8C3A_395 NA | |
| IL_8T3B_150 | 1/B5/50:52, 1/B5/428:429 | Minor groove platform | homologous IL_8P9A_377 IL_34520.1 | |
| IL_8T3B_151 | 1/B5/58:63, 1/B5/87:89 | No text annotation | homologous IL_8P9A_378 IL_61299.5 | |
| IL_8T3B_153 | 1/B5/109:112, 1/B5/302:305 | Tandem non-canonical cWW pairs | homologous IL_8P9A_380 IL_71194.1 | |
| IL_8T3B_154 | 1/B5/113:116, 1/B5/300:301 | Multiple bulged bases | homologous IL_8P9A_381 IL_71421.1 | |
| IL_8T3B_155 | 1/B5/117:122, 1/B5/295:299 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_8T3B_242 | 1/B5/208:211, 1/B5/254:256 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_8T3B_159 | 1/B5/265:267, 1/B5/288:289 | Single bulged A | homologous IL_8P9A_388 IL_14190.1 | |
| IL_8T3B_162 | 1/B5/311:316, 1/B5/348:355 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8T3B_163 | 1/B5/318:323, 1/B5/345:346 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_8T3B_164 | 1/B5/363:365, 1/B5/376:381 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8T3B_165 | 1/B5/389:391, 1/B5/406:409 | No text annotation | ||
| IL_8T3B_168 | 1/B5/443:447, 1/B5/460:461 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8T3B_169 | 1/B5/447:448, 1/B5/458:460 | Single bulged G | homologous IL_8P9A_398 IL_28408.1 | |
| IL_8T3B_171 | 1/B5/514:516, 1/B5/536:543 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_8T3B_174 | 1/B5/550:557, 1/B5/587:588 | SSU/LSU pseudoknot | homologous IL_8C3A_423 NA | |
| IL_8T3B_176 | 1/B5/562:568, 1/B5/575:583 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_8T3B_177 | 1/B5/616:622, 1/B5/1104:1105 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8T3B_178 | 1/B5/624:626, 1/B5/973:975 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8T3B_179 | 1/B5/627:631, 1/B5/968:972 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8T3B_244 | 1/B5/746:747, 1/B5/802:805 | No text annotation | homologous IL_8P9A_412 IL_73108.1 | |
| IL_8T3B_182 | 1/B5/748:750, 1/B5/799:801 | Isolated non-canonical cWW pair | homologous IL_8C3A_431 NA | |
| IL_8T3B_245 | 1/B5/751:759, 1/B5/791:798 | No text annotation | homologous IL_8CRE_430 IL_59049.2 | |
| IL_8T3B_185 | 1/B5/865:866, 1/B5/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.1 | |
| IL_8T3B_246 | 1/B5/868:869, 1/B5/958:960 | Single bulged U | geometric IL_8P9A_427 IL_97561.1 | |
| IL_8T3B_187 | 1/B5/871:873, 1/B5/954:956 | Isolated non-canonical cWW pair | geometric IL_8D29_001 IL_01003.1 | |
| IL_8T3B_188 | 1/B5/874:878, 1/B5/950:953 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8T3B_189 | 1/B5/885:888, 1/B5/924:927 | Tandem non-canonical cWW pairs | homologous IL_8C3A_439 NA | |
| IL_8T3B_190 | 1/B5/893:899, 1/B5/910:919 | No text annotation | ||
| IL_8T3B_192 | 1/B5/985:990, 1/B5/1014:1016 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8T3B_193 | 1/B5/990:994, 1/B5/1010:1014 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8T3B_194 | 1/B5/1034:1036, 1/B5/1095:1101 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8T3B_195 | 1/B5/1041:1044, 1/B5/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_8T3B_197 | 1/B5/1111:1118, 1/B5/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8P9A_428 IL_84044.1 | |
| IL_8T3B_198 | 1/B5/1146:1147, 1/B5/1630:1632 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8T3B_199 | 1/B5/1149:1151, 1/B5/1627:1628 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8T3B_247 | 1/B5/1157:1160, 1/B5/1617:1621 | C-loop | homologous IL_8CRE_445 IL_63596.12 | |
| IL_8T3B_201 | 1/B5/1173:1175, 1/B5/1464:1466 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.1 | |
| IL_8T3B_248 | 1/B5/1178:1179, 1/B5/1459:1461 | Minor groove platform | homologous IL_8CRE_447 IL_34520.1 | |
| IL_8T3B_204 | 1/B5/1212:1216, 1/B5/1448:1451 | No text annotation | ||
| IL_8T3B_207 | 1/B5/1268:1270, 1/B5/1440:1441 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8T3B_209 | 1/B5/1272:1278, 1/B5/1430:1438 | No text annotation | geometric IL_4V88_510 NA | |
| IL_8T3B_210 | 1/B5/1276:1278, 1/B5/1430:1436 | No text annotation | homologous IL_8P9A_440 IL_93811.1 | |
| IL_8T3B_211 | 1/B5/1280:1281, 1/B5/1426:1428 | Single bulged A | homologous IL_8P9A_441 IL_14190.1 | |
| IL_8T3B_212 | 1/B5/1290:1292, 1/B5/1323:1325 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
| IL_8T3B_213 | 1/B5/1306:1308, 1/B5/1317:1318 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8T3B_249 | 1/B5/1339:1342, 1/B5/1383:1385 | Isolated non-canonical cWW pair | homologous IL_8P9A_444 IL_01003.1 | |
| IL_8T3B_250 | 1/B5/1344:1348, 1/B5/1377:1381 | No text annotation | ||
| IL_8T3B_217 | 1/B5/1389:1391, 1/B5/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_8T3B_218 | 1/B5/1480:1487, 1/B5/1519:1527 | No text annotation | homologous IL_8C3A_466 NA | |
| IL_8T3B_219 | 1/B5/1488:1494, 1/B5/1513:1518 | No text annotation | homologous IL_8P9A_449 IL_22564.1 | |
| IL_8T3B_221 | 1/B5/1636:1638, 1/B5/1764:1767 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
| IL_8T3B_222 | 1/B5/1638:1641, 1/B5/1760:1764 | No text annotation | homologous IL_8P9A_453 IL_25873.1 | |
| IL_8T3B_223 | 1/B5/1642:1644, 1/B5/1757:1759 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8T3B_224 | 1/B5/1644:1647, 1/B5/1753:1757 | No text annotation | geometric IL_7LYF_005 NA | |
| IL_8T3B_225 | 1/B5/1650:1652, 1/B5/1748:1750 | Isolated non-canonical cWW pair | homologous IL_8P9A_456 IL_01003.1 | |
| IL_8T3B_226 | 1/B5/1653:1656, 1/B5/1744:1747 | Double sheared | homologous IL_8C3A_475 NA | |
| IL_8T3B_227 | 1/B5/1656:1658, 1/B5/1743:1744 | Single bulged U | homologous IL_8C3A_476 NA | |
| IL_8T3B_228 | 1/B5/1665:1667, 1/B5/1734:1736 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8T3B_229 | 1/B5/1668:1672, 1/B5/1729:1733 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_8T3B_230 | 1/B5/1672:1674, 1/B5/1727:1729 | Isolated non-canonical cWW pair | homologous IL_8P9A_461 IL_01003.1 | |
| IL_8T3B_231 | 1/B5/1675:1678, 1/B5/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_8P9A_462 IL_71194.1 | |
| IL_8T3B_232 | 1/B5/1678:1682, 1/B5/1719:1723 | Triple sheared | homologous IL_8C3A_480 NA | |
| IL_8T3B_252 | 1/B5/1685:1690, 1/B5/1711:1716 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8T3B_010 | No text annotation | ||
| IL_8T3B_052 | No text annotation | ||
| IL_8T3B_053 | No text annotation | ||
| IL_8T3B_093 | No text annotation | ||
| IL_8T3B_094 | No text annotation | ||
| IL_8T3B_095 | No text annotation | ||
| IL_8T3B_106 | Isolated non-canonical cWW with bulges | ||
| IL_8T3B_136 | Multiple bulged bases | ||
| IL_8T3B_241 | No text annotation | ||
| IL_8T3B_152 | No text annotation | ||
| IL_8T3B_156 | tWH-tWH-tHW-tHW | ||
| IL_8T3B_157 | No text annotation | ||
| IL_8T3B_158 | No text annotation | ||
| IL_8T3B_243 | No text annotation | ||
| IL_8T3B_160 | No text annotation | ||
| IL_8T3B_161 | Single bulged U | ||
| IL_8T3B_166 | Tandem non-canonical cWW pairs | ||
| IL_8T3B_167 | Single bulged U | ||
| IL_8T3B_170 | No text annotation | ||
| IL_8T3B_172 | Minor groove platform | ||
| IL_8T3B_173 | Minor groove platform | ||
| IL_8T3B_175 | Single bulged U | ||
| IL_8T3B_180 | No text annotation | ||
| IL_8T3B_181 | No text annotation | ||
| IL_8T3B_183 | No text annotation | ||
| IL_8T3B_184 | No text annotation | ||
| IL_8T3B_186 | Isolated cWH basepair | ||
| IL_8T3B_191 | Isolated cWH basepair | ||
| IL_8T3B_196 | Single bulged U | ||
| IL_8T3B_200 | No text annotation | ||
| IL_8T3B_202 | Isolated non-canonical cWW with bulges | ||
| IL_8T3B_203 | Single stack bend | ||
| IL_8T3B_205 | No text annotation | ||
| IL_8T3B_206 | No text annotation | ||
| IL_8T3B_208 | No text annotation | ||
| IL_8T3B_214 | No text annotation | ||
| IL_8T3B_215 | No text annotation | ||
| IL_8T3B_251 | Multiple bulged bases | ||
| IL_8T3B_216 | Isolated non-canonical cWW with bulges | ||
| IL_8T3B_220 | Tandem non-canonical cWW pairs | ||
| IL_8T3B_233 | No text annotation | ||
| IL_8T3B_234 | No text annotation | ||
| IL_8T3B_235 | No text annotation | ||
| IL_8T3B_236 | No text annotation | ||
| IL_8T3B_253 | No text annotation | ||
| IL_8T3B_237 | No text annotation | ||
| IL_8T3B_238 | Single bulged A |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8T3B_001 | 1/A1/113:123, 1/A1/149:158, 1/A1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8T3B_002 | 1/A1/113:124, 1/A1/144:158, 1/A1/263:267 | No text annotation | ||
| J3_8T3B_003 | 1/A1/185:189, 1/A1/205:214, 1/A1/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8T3B_004 | 1/A1/340:356, 1/A1/363:368, 1/A4/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8T3B_005 | 1/A1/369:376, 1/A1/403:404, 1/A4/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_8T3B_006 | 1/A1/369:379, 1/A1/390:404, 1/A4/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8T3B_007 | 1/A1/502:503, 1/A1/588:597, 1/A1/606:611 | No text annotation | homologous J3_8P9A_048 J3_86133.1 | |
| J3_8T3B_008 | 1/A1/814:820, 1/A1/905:907, 1/A1/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8T3B_009 | 1/A1/829:831, 1/A1/863:867, 1/A1/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8T3B_010 | 1/A1/986:987, 1/A1/1062:1066, 1/A1/1092:1098 | No text annotation | ||
| J3_8T3B_012 | 1/A1/1479:1485, 1/A1/1857:1859, 1/A1/1871:1874 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_8T3B_013 | 1/A1/1488:1491, 1/A1/1837:1843, 1/A1/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8T3B_014 | 1/A1/1526:1531, 1/A1/1591:1595, 1/A1/1612:1613 | No text annotation | homologous J3_8C3A_052 NA | |
| J3_8T3B_015 | 1/A1/1537:1542, 1/A1/1551:1561, 1/A1/1578:1584 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_8T3B_016 | 1/A1/1631:1632, 1/A1/1641:1645, 1/A1/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8T3B_017 | 1/A1/1654:1658, 1/A1/1791:1792, 1/A1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8T3B_018 | 1/A1/2432:2435, 1/A1/2512:2517, 1/A1/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_8T3B_019 | 1/A1/2529:2532, 1/A1/2547:2563, 1/A1/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_8T3B_020 | 1/A1/2651:2653, 1/A1/2754:2765, 1/A1/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8T3B_021 | 1/A1/2664:2666, 1/A1/2690:2692, 1/A1/2701:2706 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_8T3B_022 | 1/A1/2886:2889, 1/A1/2914:2916, 1/A1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8T3B_023 | 1/A1/3171:3176, 1/A1/3212:3220, 1/A1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_8T3B_024 | 1/A1/3298:3300, 1/A1/3314:3318, 1/A1/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8T3B_025 | 1/A3/9:15, 1/A3/65:67, 1/A3/111:112 | No text annotation | ||
| J3_8T3B_026 | 1/A4/44:45, 1/A4/58:64, 1/A4/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_8T3B_027 | 1/B5/41:42, 1/B5/433:439, 1/B5/464:466 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8T3B_028 | 1/B5/41:48, 1/B5/431:439, 1/B5/464:466 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_8T3B_029 | 1/B5/213:228, 1/B5/237:243, 1/B5/250:252 | No text annotation | ||
| J3_8T3B_030 | 1/B5/633:635, 1/B5/861:865, 1/B5/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8T3B_031 | 1/B5/633:635, 1/B5/861:866, 1/B5/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_8T3B_032 | 1/B5/760:763, 1/B5/773:775, 1/B5/785:790 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_8T3B_033 | 1/B5/881:884, 1/B5/928:936, 1/B5/943:947 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_8T3B_034 | 1/B5/1037:1039, 1/B5/1079:1083, 1/B5/1090:1094 | No text annotation | geometric J3_4V88_034 NA | |
| J3_8T3B_035 | 1/B5/1161:1164, 1/B5/1581:1587, 1/B5/1609:1616 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_8T3B_036 | 1/B5/1180:1188, 1/B5/1197:1210, 1/B5/1454:1458 | No text annotation | ||
| J3_8T3B_043 | 1/B5/1216:1220, 1/B5/1263:1267, 1/B5/1442:1448 | No text annotation | homologous J3_8CRE_081 J3_87797.2 | |
| J3_8T3B_038 | 1/B5/1283:1288, 1/B5/1327:1332, 1/B5/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_8T3B_039 | 1/B5/1293:1294, 1/B5/1303:1306, 1/B5/1318:1322 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_8T3B_040 | 1/B5/1335:1338, 1/B5/1386:1389, 1/B5/1412:1416 | No text annotation | ||
| J3_8T3B_041 | 1/B5/1335:1338, 1/B5/1386:1391, 1/B5/1407:1416 | No text annotation | homologous J3_8C3A_086 NA | |
| J4_8T3B_001 | 1/A1/112:113, 1/A1/267:272, 1/A1/293:299, 1/A1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_8T3B_002 | 1/A1/185:189, 1/A1/205:208, 1/A1/212:214, 1/A1/226:231 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_8T3B_003 | 1/A1/1451:1457, 1/A1/1475:1476, 1/A1/1877:1880, 1/A1/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_8T3B_004 | 1/A1/1492:1496, 1/A1/1520:1525, 1/A1/1614:1615, 1/A1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_8T3B_005 | 1/A1/1674:1675, 1/A1/1693:1698, 1/A1/1747:1753, 1/A1/1772:1773 | No text annotation | ||
| J4_8T3B_006 | 1/A1/2130:2134, 1/A1/2146:2150, 1/A1/2186:2190, 1/A1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_8T3B_007 | 1/A1/2192:2194, 1/A1/2248:2249, 1/A1/2267:2276, 1/A1/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8T3B_008 | 1/A1/2654:2658, 1/A1/2712:2716, 1/A1/2740:2742, 1/A1/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8T3B_009 | 1/A1/3010:3012, 1/A1/3042:3043, 1/A1/3098:3100, 1/A1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_8T3B_010 | 1/B5/99:107, 1/B5/307:309, 1/B5/357:361, 1/B5/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8T3B_011 | 1/B5/622:624, 1/B5/975:980, 1/B5/1021:1032, 1/B5/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_8T3B_012 | 1/B5/1168:1172, 1/B5/1467:1474, 1/B5/1533:1546, 1/B5/1565:1577 | No text annotation | ||
| J5_8T3B_001 | 1/A1/20:22, 1/A4/35:42, 1/A4/102:107, 1/A4/115:116, 1/A4/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8T3B_002 | 1/A1/658:663, 1/A1/799:802, 1/A1/941:944, 1/A1/1375:1376, 1/A1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8T3B_003 | 1/A1/675:678, 1/A1/702:706, 1/A1/713:721, 1/A1/749:751, 1/A1/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_8T3B_004 | 1/A1/1906:1914, 1/A1/1938:1939, 1/A1/2109:2110, 1/A1/2114:2122, 1/A1/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8T3B_005 | 1/A1/2399:2406, 1/A1/2815:2823, 1/A1/2867:2876, 1/A1/2951:2957, 1/A1/2975:2980 | No text annotation | ||
| J5_8T3B_006 | 1/A1/2416:2419, 1/A1/2611:2614, 1/A1/2627:2628, 1/A1/2650:2651, 1/A1/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_8T3B_007 | 1/B5/31:35, 1/B5/473:479, 1/B5/509:514, 1/B5/543:546, 1/B5/592:595 | No text annotation | ||
| J5_8T3B_008 | 1/B5/31:35, 1/B5/473:479, 1/B5/509:516, 1/B5/536:546, 1/B5/592:595 | No text annotation | ||
| J5_8T3B_009 | 1/B5/54:57, 1/B5/90:97, 1/B5/386:389, 1/B5/409:411, 1/B5/422:426 | No text annotation | ||
| J5_8T3B_010 | 1/B5/123:143, 1/B5/172:182, 1/B5/203:206, 1/B5/259:265, 1/B5/289:294 | No text annotation | ||
| J5_8T3B_011 | 1/B5/123:143, 1/B5/172:182, 1/B5/203:206, 1/B5/259:267, 1/B5/288:294 | No text annotation | ||
| J5_8T3B_012 | 1/B5/635:641, 1/B5/693:702, 1/B5/736:744, 1/B5/807:819, 1/B5/852:861 | No text annotation | ||
| J6_8T3B_001 | 1/A1/22:27, 1/A1/58:68, 1/A1/75:79, 1/A1/106:110, 1/A1/321:331, 1/A4/32:35 | No text annotation | ||
| J6_8T3B_002 | 1/A1/2416:2419, 1/A1/2611:2614, 1/A1/2627:2628, 1/A1/2650:2653, 1/A1/2754:2765, 1/A1/2793:2804 | No text annotation | ||
| J7_8T3B_001 | 1/A1/949:956, 1/A1/965:968, 1/A1/1114:1117, 1/A1/1141:1146, 1/A1/1157:1161, 1/A1/1338:1339, 1/A1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8T3B_011 | No text annotation | ||
| J3_8T3B_037 | No text annotation | ||
| J3_8T3B_042 | No text annotation |
Coloring options: