HL_8T3B_080
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CGACCCUUUGGAAG
- Length
- 14 nucleotides
- Bulged bases
- 8T3B|1|B5|C|190, 8T3B|1|B5|C|191, 8T3B|1|B5|U|192, 8T3B|1|B5|U|193, 8T3B|1|B5|U|194
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3B_080 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3521
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8T3B|1|B5|C|186
8T3B|1|B5|G|187
8T3B|1|B5|A|188
8T3B|1|B5|C|189
8T3B|1|B5|C|190
8T3B|1|B5|C|191
8T3B|1|B5|U|192
8T3B|1|B5|U|193
8T3B|1|B5|U|194
8T3B|1|B5|G|195
8T3B|1|B5|G|196
8T3B|1|B5|A|197
8T3B|1|B5|A|198
8T3B|1|B5|G|199
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BI
- 40S ribosomal protein S8-A
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