HL_8T3B_083

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8T3B|1|B5|U|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3B_083 not in the Motif Atlas

Homologous match to HL_8P9A_196

Geometric discrepancy: 0.3155

The information below is about HL_8P9A_196

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8T3B|1|B5|C|276
8T3B|1|B5|U|277
8T3B|1|B5|U|278
8T3B|1|B5|G|279

Current chains

Chain B5

18S rRNA

Nearby chains