HL_8T3B_084

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8T3B|1|B5|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3B_084 not in the Motif Atlas

Homologous match to HL_8P9A_197

Geometric discrepancy: 0.2448

The information below is about HL_8P9A_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T3B|1|B5|G|330
8T3B|1|B5|A|331
8T3B|1|B5|U|332
8T3B|1|B5|A|333
8T3B|1|B5|G|334
8T3B|1|B5|U|335
8T3B|1|B5|G|336
8T3B|1|B5|G|337
8T3B|1|B5|C|338

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A