HL_8T3B_094

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUUCUAUUUUGUUGGUUUCUAGGAC

Length

25 nucleotides

Bulged bases

8T3B|1|B5|U|828, 8T3B|1|B5|U|831, 8T3B|1|B5|U|832, 8T3B|1|B5|G|834, 8T3B|1|B5|U|835, 8T3B|1|B5|U|836

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|B5|G|824
8T3B|1|B5|U|825
8T3B|1|B5|U|826
8T3B|1|B5|C|827
8T3B|1|B5|U|828
8T3B|1|B5|A|829
8T3B|1|B5|U|830
8T3B|1|B5|U|831
8T3B|1|B5|U|832
8T3B|1|B5|U|833
8T3B|1|B5|G|834
8T3B|1|B5|U|835
8T3B|1|B5|U|836
8T3B|1|B5|G|837
8T3B|1|B5|G|838
8T3B|1|B5|U|839
8T3B|1|B5|U|840
8T3B|1|B5|U|841
8T3B|1|B5|C|842
8T3B|1|B5|U|843
8T3B|1|B5|A|844
8T3B|1|B5|G|845
8T3B|1|B5|G|846
8T3B|1|B5|A|847
8T3B|1|B5|C|848

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain BL

40S ribosomal protein S11-A