HL_8T3B_112

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGCAUCGAAAACUCUCCGAACACUAGGUGCA

Length

31 nucleotides

Bulged bases

8T3B|1|EC|G|6789, 8T3B|1|EC|A|6791, 8T3B|1|EC|A|6792, 8T3B|1|EC|A|6793, 8T3B|1|EC|C|6794, 8T3B|1|EC|A|6801, 8T3B|1|EC|A|6802, 8T3B|1|EC|U|6806, 8T3B|1|EC|A|6807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|EC|U|6783
8T3B|1|EC|G|6784
8T3B|1|EC|C|6785
8T3B|1|EC|A|6786
8T3B|1|EC|U|6787
8T3B|1|EC|C|6788
8T3B|1|EC|G|6789
8T3B|1|EC|A|6790
8T3B|1|EC|A|6791
8T3B|1|EC|A|6792
8T3B|1|EC|A|6793
8T3B|1|EC|C|6794
8T3B|1|EC|U|6795
8T3B|1|EC|C|6796
8T3B|1|EC|U|6797
8T3B|1|EC|C|6798
8T3B|1|EC|C|6799
8T3B|1|EC|G|6800
8T3B|1|EC|A|6801
8T3B|1|EC|A|6802
8T3B|1|EC|C|6803
8T3B|1|EC|A|6804
8T3B|1|EC|C|6805
8T3B|1|EC|U|6806
8T3B|1|EC|A|6807
8T3B|1|EC|G|6808
8T3B|1|EC|G|6809
8T3B|1|EC|U|6810
8T3B|1|EC|G|6811
8T3B|1|EC|C|6812
8T3B|1|EC|A|6813

Current chains

Chain EC

TSV IRES

Nearby chains

Chain Ao

60S ribosomal protein L42-A

Chain E

RPL1A isoform 1