HL_8T3B_113

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUAUUUAG

Length

8 nucleotides

Bulged bases

8T3B|1|EC|A|6840, 8T3B|1|EC|U|6841, 8T3B|1|EC|U|6843

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3B_113 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1358

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8T3B|1|EC|C|6838
8T3B|1|EC|U|6839
8T3B|1|EC|A|6840
8T3B|1|EC|U|6841
8T3B|1|EC|U|6842
8T3B|1|EC|U|6843
8T3B|1|EC|A|6844
8T3B|1|EC|G|6845

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p

Chain BO

40S ribosomal protein S14-A