HL_8T3C_011

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3C_011 not in the Motif Atlas

Homologous match to HL_8P9A_123

Geometric discrepancy: 0.1942

The information below is about HL_8P9A_123

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8T3C|1|A1|U|382
8T3C|1|A1|G|383
8T3C|1|A1|A|384
8T3C|1|A1|A|385
8T3C|1|A1|A|386
8T3C|1|A1|A|387

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A