RNA 3D Hub //

8T3C Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8T3C_0011/A1/38:45No text annotation
homologous
HL_8P9A_113
HL_48677.1
HL_8T3C_0021/A1/69:74No text annotation
homologous
HL_8P9A_114
HL_51020.2
HL_8T3C_0031/A1/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_8T3C_0051/A1/194:201T-loop with 1 bulged base
homologous
HL_8P9A_117
HL_13999.3
HL_8T3C_0061/A1/208:212No text annotation
geometric
HL_8G9Z_001
HL_75660.7
HL_8T3C_0071/A1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8T3C_0081/A1/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_8T3C_0091/A1/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8T3C_0101/A1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_8T3C_0131/A1/599:604GNRA
homologous
HL_8P9A_125
HL_34789.3
HL_8T3C_0141/A1/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8T3C_0151/A1/687:693No text annotation
geometric
HL_5J7L_151
NA
HL_8T3C_0161/A1/707:712GNRA
homologous
HL_8P9A_128
HL_34789.3
HL_8T3C_0191/A1/844:849GNRA
homologous
HL_8C3A_019
NA
HL_8T3C_0201/A1/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_8T3C_0211/A1/910:918No text annotation
homologous
HL_8C3A_021
NA
HL_8T3C_0221/A1/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_8T3C_0241/A1/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_8T3C_0251/A1/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_8T3C_0281/A1/1347:1357No text annotation
homologous
HL_8C3A_029
NA
HL_8T3C_0291/A1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_8T3C_0301/A1/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8T3C_0311/A1/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_8T3C_0321/A1/1544:1549GNRA variation
homologous
HL_8P9A_145
HL_34789.3
HL_8T3C_0341/A1/1599:1608No text annotation
homologous
HL_8C3A_035
NA
HL_8T3C_0351/A1/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_8T3C_0361/A1/1680:1688Pseudoknot geometry
homologous
HL_8P9A_148
HL_22758.1
HL_8T3C_0371/A1/1719:1725No text annotation
homologous
HL_8C3A_038
NA
HL_8T3C_0391/A1/1792:1796Mini UNCG
homologous
HL_8P9A_151
HL_90436.3
HL_8T3C_0401/A1/1844:1851No text annotation
homologous
HL_8P9A_152
HL_28592.2
HL_8T3C_0411/A1/1862:1868GNRA
homologous
HL_8P9A_153
HL_34789.3
HL_8T3C_0421/A1/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_8T3C_0431/A1/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_8T3C_0441/A1/2135:2145No text annotation
homologous
HL_8P9A_157
HL_87681.1
HL_8T3C_0451/A1/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_8T3C_0471/A1/2253:2263No text annotation
homologous
HL_8C3A_049
NA
HL_8T3C_0481/A1/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_8T3C_0491/A1/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_8T3C_0531/A1/2616:2624No text annotation
homologous
HL_8P9A_165
HL_11974.2
HL_8T3C_0541/A1/2633:2645No text annotation
homologous
HL_8P9A_166
HL_02042.1
HL_8T3C_0561/A1/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_8T3C_0571/A1/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_8T3C_0591/A1/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_8T3C_0601/A1/2840:2848No text annotation
homologous
HL_8P9A_172
HL_52011.1
HL_8T3C_1171/A1/2897:2904GNRA variation
homologous
HL_8CRE_061
NA
HL_8T3C_0621/A1/2920:2926No text annotation
homologous
HL_8P9A_174
HL_48677.1
HL_8T3C_0631/A1/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_8T3C_0641/A1/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_8T3C_0651/A1/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8T3C_0661/A1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_8T3C_0681/A1/3240:3247No text annotation
homologous
HL_8C3A_070
NA
HL_8T3C_0691/A1/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_8T3C_0711/A3/36:41No text annotation
homologous
HL_8C3A_073
NA
HL_8T3C_0721/A3/88:93GNRA
homologous
HL_8C3A_074
NA
HL_8T3C_0731/A4/47:56Pseudoknot with intercalation
homologous
HL_8C3A_229
NA
HL_8T3C_0741/A4/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_8T3C_0751/A4/108:114No text annotation
homologous
HL_8P9A_188
HL_13184.2
HL_8T3C_0771/B5/7:17No text annotation
homologous
HL_8C3A_192
NA
HL_8T3C_0841/B5/330:338GNRA related
homologous
HL_8C3A_199
NA
HL_8T3C_0861/B5/393:404No text annotation
homologous
HL_8C3A_201
NA
HL_8T3C_0951/B5/900:909No text annotation
homologous
HL_8C3A_211
NA
HL_8T3C_0961/B5/937:942GNRA
homologous
HL_8P9A_210
HL_34789.3
HL_8T3C_0971/B5/997:1007No text annotation
homologous
HL_8C3A_213
NA
HL_8T3C_0991/B5/1084:1089GNRA
homologous
HL_8P9A_213
HL_34789.3
HL_8T3C_1001/B5/1121:1126GNRA
homologous
HL_8P9A_214
HL_34789.3
HL_8T3C_1031/B5/1295:1302GNRA with extra cWH
geometric
HL_7QR8_003
NA
HL_8T3C_1091/B5/1594:1602No text annotation
homologous
HL_8C3A_225
NA
HL_8T3C_1111/B5/1778:1783GNRA variation
homologous
HL_8C3A_227
NA

Problematic loops

#loop idProblemSequence
HL_8T3C_004No text annotation
HL_8T3C_011GNRA
HL_8T3C_012No text annotation
HL_8T3C_017GNRA
HL_8T3C_018No text annotation
HL_8T3C_023No text annotation
HL_8T3C_026No text annotation
HL_8T3C_027Externally structured
HL_8T3C_033No text annotation
HL_8T3C_038Externally structured
HL_8T3C_046GNRA
HL_8T3C_050No text annotation
HL_8T3C_051No text annotation
HL_8T3C_052Mini UNCG
HL_8T3C_055No text annotation
HL_8T3C_058GNRA
HL_8T3C_061No text annotation
HL_8T3C_067Mini UNCG
HL_8T3C_070Mini UNCG
HL_8T3C_076No text annotation
HL_8T3C_078No text annotation
HL_8T3C_079GNRA related
HL_8T3C_080No text annotation
HL_8T3C_081No text annotation
HL_8T3C_082T-loop with 1 bulged base
HL_8T3C_083No text annotation
HL_8T3C_085No text annotation
HL_8T3C_087UNCG
HL_8T3C_088No text annotation
HL_8T3C_089Externally structured
HL_8T3C_090No text annotation
HL_8T3C_091GNRA variation
HL_8T3C_092No text annotation
HL_8T3C_093No text annotation
HL_8T3C_094No text annotation
HL_8T3C_098No text annotation
HL_8T3C_101No text annotation
HL_8T3C_102Anticodon loop related
HL_8T3C_104T-loop related
HL_8T3C_105No text annotation
HL_8T3C_106UNCG variation
HL_8T3C_107GNRA
HL_8T3C_108No text annotation
HL_8T3C_110No text annotation
HL_8T3C_112No text annotation
HL_8T3C_113No text annotation
HL_8T3C_114No text annotation
HL_8T3C_115No text annotation
HL_8T3C_116No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8T3C_0011/A1/7:8,
1/A4/150:152		Single bulged C
homologous
IL_8P9A_231
IL_05642.2
IL_8T3C_0021/A1/13:15,
1/A4/144:145		Single bulged U
homologous
IL_8P9A_232
IL_97561.3
IL_8T3C_0031/A1/27:28,
1/A1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_8T3C_0041/A1/31:38,
1/A1/45:53		No text annotation
homologous
IL_8C3A_005
NA
IL_8T3C_0051/A1/82:89,
1/A1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_8T3C_0061/A1/123:124,
1/A1/144:149		No text annotation
homologous
IL_8P9A_236
IL_10396.1
IL_8T3C_0071/A1/125:127,
1/A1/141:143		Isolated non-canonical cWW pair
homologous
IL_8P9A_237
IL_01003.3
IL_8T3C_0121/A1/189:191,
1/A1/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_8T3C_0131/A1/337:339,
1/A4/25:26		Single bulged A
homologous
IL_8P9A_242
IL_14190.2
IL_8T3C_0141/A1/376:379,
1/A1/390:403		No text annotation
geometric
IL_4WF9_015
IL_44923.1
IL_8T3C_0151/A1/404:410,
1/A4/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8T3C_0161/A1/429:431,
1/A1/628:630		Isolated non-canonical cWW pair
homologous
IL_8P9A_245
IL_71625.2
IL_8T3C_0171/A1/435:495,
1/A1/618:624		No text annotation
IL_8T3C_0191/A1/517:525,
1/A1/567:573		No text annotation
homologous
IL_8P9A_247
IL_06606.1
IL_8T3C_0201/A1/531:538,
1/A1/553:561		No text annotation
homologous
IL_8P9A_248
IL_25001.1
IL_8T3C_0211/A1/668:670,
1/A1/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8T3C_0221/A1/680:684,
1/A1/696:700		No text annotation
homologous
IL_8P9A_250
IL_87030.1
IL_8T3C_0231/A1/725:728,
1/A1/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_8T3C_0241/A1/752:753,
1/A1/779:781		Single bulged A
homologous
IL_8P9A_252
IL_14190.2
IL_8T3C_0251/A1/755:756,
1/A1/775:777		Single bulged U
homologous
IL_8C3A_027
NA
IL_8T3C_0271/A1/803:805,
1/A1/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8T3C_0281/A1/805:809,
1/A1/931:938		No text annotation
homologous
IL_8P9A_256
IL_73855.1
IL_8T3C_0291/A1/828:829,
1/A1/895:897		Single bulged A
homologous
IL_8C3A_031
NA
IL_8T3C_0301/A1/833:834,
1/A1/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_8T3C_0311/A1/834:838,
1/A1/855:859		Triple sheared
homologous
IL_8C3A_033
NA
IL_8T3C_0321/A1/869:872,
1/A1/888:890		No text annotation
homologous
IL_8P9A_259
IL_36931.2
IL_8T3C_0331/A1/873:875,
1/A1/886:887		Single bulged U
homologous
IL_8P9A_260
IL_97561.3
IL_8T3C_0341/A1/907:909,
1/A1/919:923		No text annotation
homologous
IL_8C3A_036
NA
IL_8T3C_2441/A1/969:970,
1/A1/1111:1113		Single stack bend
homologous
IL_8P9A_263
IL_15011.2
IL_8T3C_0361/A1/977:982,
1/A1/1101:1104		No text annotation
IL_8T3C_0371/A1/983:985,
1/A1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_8T3C_0381/A1/991:997,
1/A1/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_8P9A_266
IL_94128.1
IL_8T3C_0391/A1/997:998,
1/A1/1050:1052		Minor groove platform
homologous
IL_8C3A_042
NA
IL_8T3C_0401/A1/999:1004,
1/A1/1046:1049		C-loop with bulged stacked A's
homologous
IL_8P9A_268
IL_16301.1
IL_8T3C_0411/A1/1006:1009,
1/A1/1041:1044		Tandem non-canonical cWW pairs
homologous
IL_8P9A_269
IL_71194.2
IL_8T3C_0421/A1/1009:1011,
1/A1/1039:1041		Isolated non-canonical cWW pair
homologous
IL_8P9A_270
IL_01003.3
IL_8T3C_0441/A1/1074:1076,
1/A1/1083:1084		Single bulged G
homologous
IL_8C3A_048
NA
IL_8T3C_0451/A1/1120:1122,
1/A1/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8T3C_2451/A1/1167:1171,
1/A1/1328:1332		UAA/GAN
homologous
IL_8CRE_051
NA
IL_8T3C_0481/A1/1173:1180,
1/A1/1325:1326		SSU/LSU pseudoknot
homologous
IL_8P9A_277
IL_07396.1
IL_8T3C_0501/A1/1187:1194,
1/A1/1314:1319		No text annotation
homologous
IL_8C3A_054
NA
IL_8T3C_0511/A1/1194:1205,
1/A1/1299:1314		No text annotation
homologous
IL_8C3A_055
NA
IL_8T3C_0521/A1/1207:1209,
1/A1/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_8T3C_0561/A1/1376:1378,
1/A1/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_8T3C_0571/A1/1385:1387,
1/A1/1420:1421		Single bulged A
homologous
IL_8P9A_286
IL_14190.2
IL_8T3C_0581/A1/1388:1395,
1/A1/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_8T3C_0591/A1/1398:1400,
1/A1/1411:1412		Single bulged A
homologous
IL_8P9A_288
IL_14190.2
IL_8T3C_0601/A1/1444:1450,
1/A1/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_8T3C_0611/A1/1501:1505,
1/A1/1513:1515		C-loop
homologous
IL_8C3A_482
NA
IL_8T3C_0621/A1/1532:1536,
1/A1/1585:1590		UAA/GAN
homologous
IL_8P9A_291
IL_08938.1
IL_8T3C_0631/A1/1618:1621,
1/A1/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_8T3C_0641/A1/1623:1624,
1/A1/1820:1822		No text annotation
homologous
IL_8C3A_483
NA
IL_8T3C_0651/A1/1625:1631,
1/A1/1811:1819		No text annotation
IL_8T3C_0661/A1/1645:1649,
1/A1/1806:1810		Triple sheared
homologous
IL_8C3A_073
NA
IL_8T3C_0671/A1/1661:1663,
1/A1/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8T3C_0681/A1/1669:1670,
1/A1/1778:1780		Single bulged C
homologous
IL_8P9A_297
IL_05642.2
IL_8T3C_0691/A1/1670:1671,
1/A1/1776:1778		Single stack bend
homologous
IL_8P9A_298
IL_15011.2
IL_8T3C_0701/A1/1702:1707,
1/A1/1737:1743		No text annotation
homologous
IL_8P9A_300
IL_00680.1
IL_8T3C_0711/A1/1711:1718,
1/A1/1726:1733		Kink-turn
geometric
IL_7JRS_002
IL_90775.2
IL_8T3C_0721/A1/1882:1889,
1/A1/2346:2350		No text annotation
IL_8T3C_0731/A1/1895:1897,
1/A1/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_8T3C_0741/A1/1898:1901,
1/A1/2336:2337		Major groove platform; stack outside cWW
geometric
IL_8C3A_082
NA
IL_8T3C_0751/A1/1898:1906,
1/A1/2333:2337		No text annotation
geometric
IL_8C3A_484
NA
IL_8T3C_0761/A1/1901:1906,
1/A1/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_8T3C_0771/A1/1918:1923,
1/A1/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_8T3C_0781/A1/1940:1942,
1/A1/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8P9A_308
IL_01003.3
IL_8T3C_0801/A1/2128:2129,
1/A1/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_8T3C_0811/A1/2156:2161,
1/A1/2173:2180		No text annotation
homologous
IL_8P9A_311
IL_14684.1
IL_8T3C_0821/A1/2191:2192,
1/A1/2315:2317		Single stack bend
geometric
IL_8C3A_091
NA
IL_8T3C_0831/A1/2196:2199,
1/A1/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_8T3C_2471/A1/2200:2201,
1/A1/2241:2244		Major groove intercalation
homologous
IL_8P9A_313
IL_71421.2
IL_8T3C_0851/A1/2204:2206,
1/A1/2237:2238		Single stack bend
homologous
IL_8C3A_091
NA
IL_8T3C_0871/A1/2211:2217,
1/A1/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_8T3C_0881/A1/2277:2288,
1/A1/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_8T3C_2481/A1/2391:2394,
1/A1/2986:2988		No text annotation
homologous
IL_8P9A_319
IL_75527.2
IL_8T3C_0901/A1/2396:2398,
1/A1/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_8T3C_0911/A1/2409:2411,
1/A1/2811:2812		Single bulged U
homologous
IL_8P9A_321
IL_97561.3
IL_8T3C_0921/A1/2412:2413,
1/A1/2807:2810		Minor groove platform
homologous
IL_8C3A_099
NA
IL_8T3C_0931/A1/2423:2425,
1/A1/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_8T3C_1001/A1/2520:2526,
1/A1/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_8T3C_1011/A1/2614:2615,
1/A1/2625:2627		Single bulged A
homologous
IL_8P9A_325
IL_14190.2
IL_8T3C_1031/A1/2718:2721,
1/A1/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_8T3C_2491/A1/2770:2773,
1/A1/2787:2788		No text annotation
homologous
IL_8CRE_110
NA
IL_8T3C_1051/A1/2823:2826,
1/A1/2863:2867		No text annotation
homologous
IL_8C3A_111
NA
IL_8T3C_1061/A1/2826:2828,
1/A1/2862:2863		Major groove platform
homologous
IL_8C3A_112
NA
IL_8T3C_2501/A1/2828:2830,
1/A1/2858:2862		No text annotation
homologous
IL_8CRE_113
NA
IL_8T3C_1081/A1/2835:2839,
1/A1/2849:2853		Double sheared with non-canonical cWW
homologous
IL_8P9A_333
IL_87767.2
IL_8T3C_1091/A1/2876:2877,
1/A1/2949:2951		No text annotation
homologous
IL_8P9A_334
IL_46637.2
IL_8T3C_1101/A1/2879:2881,
1/A1/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_8T3C_1111/A1/2881:2882,
1/A1/2940:2943		No text annotation
homologous
IL_8P9A_336
IL_44609.2
IL_8T3C_1121/A1/2889:2891,
1/A1/2912:2914		Isolated non-canonical cWW pair
geometric
IL_7MLW_001
IL_01003.3
IL_8T3C_1131/A1/2889:2892,
1/A1/2909:2914		No text annotation
geometric
IL_5TBW_475
NA
IL_8T3C_1141/A1/2891:2892,
1/A1/2909:2912		Major groove platform with intercalation
homologous
IL_8C3A_119
NA
IL_8T3C_1151/A1/2918:2920,
1/A1/2926:2928		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_8T3C_1161/A1/2960:2961,
1/A1/2970:2972		Single bulged A
geometric
IL_1GID_009
NA
IL_8T3C_1171/A1/3004:3007,
1/A1/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_8T3C_1181/A1/3012:3014,
1/A1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.2
IL_8T3C_1191/A1/3018:3025,
1/A1/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_8T3C_1201/A1/3047:3051,
1/A1/3091:3094		No text annotation
homologous
IL_8P9A_345
IL_06671.1
IL_8T3C_1211/A1/3054:3059,
1/A1/3084:3088		No text annotation
homologous
IL_8P9A_346
IL_98200.1
IL_8T3C_1221/A1/3063:3064,
1/A1/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_8T3C_1231/A1/3103:3107,
1/A1/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8T3C_1271/A1/3179:3188,
1/A1/3204:3210		No text annotation
homologous
IL_8P9A_352
IL_28855.1
IL_8T3C_1291/A1/3225:3229,
1/A1/3258:3260		No text annotation
homologous
IL_8P9A_353
IL_62925.1
IL_8T3C_1321/A1/3300:3303,
1/A1/3311:3314		Tandem non-canonical cWW pairs
homologous
IL_8P9A_356
IL_71194.2
IL_8T3C_1351/A1/3328:3330,
1/A1/3373:3378		No text annotation
homologous
IL_8P9A_359
IL_00086.1
IL_8T3C_1361/A1/3332:3337,
1/A1/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_8T3C_1381/A1/3342:3345,
1/A1/3360:3363		Double sheared; A in syn
homologous
IL_8P9A_362
IL_58355.2
IL_8T3C_1411/A3/21:29,
1/A3/49:58		No text annotation
IL_8T3C_1431/A3/32:36,
1/A3/41:45		No text annotation
homologous
IL_8C3A_147
NA
IL_8T3C_1441/A3/72:80,
1/A3/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_369
IL_62167.3
IL_8T3C_1451/A3/84:87,
1/A3/94:96		Isolated non-canonical cWW pair
homologous
IL_8C3A_149
NA
IL_8T3C_1461/A4/64:66,
1/A4/93:96		Isolated non-canonical cWW with bulges
homologous
IL_8P9A_371
IL_76400.1
IL_8T3C_1471/A4/68:69,
1/A4/89:91		Single bulged U
homologous
IL_8P9A_372
IL_97561.3
IL_8T3C_1481/B5/24:26,
1/B5/600:601		Single bulged C
homologous
IL_8P9A_373
IL_05642.2
IL_8T3C_1511/B5/42:48,
1/B5/431:433		No text annotation
homologous
IL_8C3A_395
NA
IL_8T3C_1571/B5/117:122,
1/B5/295:299		No text annotation
homologous
IL_8C3A_401
NA
IL_8T3C_1601/B5/204:208,
1/B5/257:263		No text annotation
IL_8T3C_1641/B5/311:316,
1/B5/348:355		Kink-turn with non-sequential stacking
homologous
IL_8C3A_410
NA
IL_8T3C_1651/B5/318:323,
1/B5/345:346		No text annotation
homologous
IL_8P9A_392
IL_01372.1
IL_8T3C_1661/B5/363:365,
1/B5/376:381		No text annotation
homologous
IL_8C3A_412
NA
IL_8T3C_1791/B5/562:568,
1/B5/575:583		No text annotation
homologous
IL_8P9A_404
IL_52042.1
IL_8T3C_1801/B5/616:622,
1/B5/1104:1105		No text annotation
homologous
IL_8C3A_426
NA
IL_8T3C_1811/B5/624:626,
1/B5/973:975		Isolated non-canonical cWW pair
homologous
IL_8P9A_406
IL_01003.3
IL_8T3C_2531/B5/868:869,
1/B5/958:960		Single bulged U
geometric
IL_8P9A_281
IL_97561.3
IL_8T3C_1901/B5/871:874,
1/B5/953:956		Tandem non-canonical cWW pairs
homologous
IL_8C3A_437
NA
IL_8T3C_1911/B5/874:878,
1/B5/950:953		Tandem non-canonical cWW pairs
homologous
IL_8C3A_438
NA
IL_8T3C_1951/B5/985:990,
1/B5/1014:1016		No text annotation
homologous
IL_8C3A_441
NA
IL_8T3C_1961/B5/990:994,
1/B5/1010:1014		tSH-tHW-tHS
homologous
IL_8C3A_442
NA
IL_8T3C_1971/B5/1034:1036,
1/B5/1095:1101		No text annotation
homologous
IL_8C3A_443
NA
IL_8T3C_2541/B5/1041:1044,
1/B5/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_8CRE_440
IL_15225.2
IL_8T3C_2551/B5/1111:1118,
1/B5/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_8CRE_442
IL_84044.1
IL_8T3C_2011/B5/1146:1147,
1/B5/1630:1632		Single bulged A
homologous
IL_8C3A_447
NA
IL_8T3C_2041/B5/1173:1175,
1/B5/1464:1466		Isolated non-canonical cWW pair
homologous
IL_8P9A_432
IL_01003.3
IL_8T3C_2141/B5/1290:1292,
1/B5/1323:1325		Isolated non-canonical cWW pair
homologous
IL_8C3A_459
NA
IL_8T3C_2171/B5/1344:1348,
1/B5/1377:1381		No text annotation
IL_8T3C_2181/B5/1344:1350,
1/B5/1375:1381		No text annotation
IL_8T3C_2221/B5/1389:1391,
1/B5/1407:1412		Major groove platform; stack outside cWW
geometric
IL_4V88_458
NA
IL_8T3C_2231/B5/1480:1494,
1/B5/1513:1527		No text annotation
IL_8T3C_2261/B5/1636:1638,
1/B5/1764:1767		No text annotation
homologous
IL_8P9A_452
IL_18228.1
IL_8T3C_2271/B5/1638:1641,
1/B5/1760:1764		No text annotation
homologous
IL_8C3A_471
NA
IL_8T3C_2281/B5/1642:1644,
1/B5/1757:1759		Isolated non-canonical cWW pair
homologous
IL_8P9A_454
IL_01003.3
IL_8T3C_2291/B5/1644:1647,
1/B5/1753:1757		No text annotation
geometric
IL_7LYF_005
NA
IL_8T3C_2301/B5/1650:1652,
1/B5/1748:1750		Isolated non-canonical cWW pair
homologous
IL_8C3A_474
NA
IL_8T3C_2311/B5/1653:1656,
1/B5/1744:1747		Double sheared
homologous
IL_8P9A_457
IL_58355.2
IL_8T3C_2321/B5/1656:1658,
1/B5/1743:1744		Single bulged U
homologous
IL_8P9A_458
IL_97561.3
IL_8T3C_2581/B5/1665:1667,
1/B5/1734:1736		Isolated non-canonical cWW pair
homologous
IL_8CRE_473
IL_71625.2
IL_8T3C_2341/B5/1668:1672,
1/B5/1729:1733		Double sheared with non-canonical cWW
geometric
IL_5J7L_056
NA
IL_8T3C_2351/B5/1672:1674,
1/B5/1727:1729		Isolated non-canonical cWW pair
homologous
IL_8P9A_461
IL_01003.3

Problematic loops

#loop idProblemSequence
IL_8T3C_008Other IL
IL_8T3C_242Single stack bend
IL_8T3C_009No text annotation
IL_8T3C_010No text annotation
IL_8T3C_243No text annotation
IL_8T3C_011No text annotation
IL_8T3C_018Single bulged A
IL_8T3C_026No text annotation
IL_8T3C_035No text annotation
IL_8T3C_043Isolated non-canonical cWW pair
IL_8T3C_046No text annotation
IL_8T3C_047No text annotation
IL_8T3C_049Single bulged U
IL_8T3C_053No text annotation
IL_8T3C_246No text annotation
IL_8T3C_054No text annotation
IL_8T3C_055No text annotation
IL_8T3C_079No text annotation
IL_8T3C_084Isolated non-canonical cWW with bulges
IL_8T3C_086Decoding loop related
IL_8T3C_089No text annotation
IL_8T3C_094No text annotation
IL_8T3C_095Tandem non-canonical cWW pairs
IL_8T3C_096No text annotation
IL_8T3C_097No text annotation
IL_8T3C_098No text annotation
IL_8T3C_099No text annotation
IL_8T3C_102No text annotation
IL_8T3C_104No text annotation
IL_8T3C_107No text annotation
IL_8T3C_124Isolated non-canonical cWW pair
IL_8T3C_125Isolated non-canonical cWW pair
IL_8T3C_126Single bulged A
IL_8T3C_128Single bulged U
IL_8T3C_130Isolated non-canonical cWW pair
IL_8T3C_131Tandem non-canonical cWW pairs
IL_8T3C_133Single bulged U
IL_8T3C_134Single bulged U
IL_8T3C_137Single bulged U
IL_8T3C_139Multiple bulged bases
IL_8T3C_140Single bulged A
IL_8T3C_142Single stack bend
IL_8T3C_149Isolated non-canonical cWW pair
IL_8T3C_150Triple sheared related
IL_8T3C_152Minor groove platform
IL_8T3C_153No text annotation
IL_8T3C_154No text annotation
IL_8T3C_155Tandem non-canonical cWW pairs
IL_8T3C_156Multiple bulged bases
IL_8T3C_158No text annotation
IL_8T3C_159No text annotation
IL_8T3C_161Single bulged A
IL_8T3C_162No text annotation
IL_8T3C_163Single bulged U
IL_8T3C_167Isolated cWH basepair
IL_8T3C_168No text annotation
IL_8T3C_169Single bulged U
IL_8T3C_170C-loop
IL_8T3C_171Single bulged G
IL_8T3C_172No text annotation
IL_8T3C_173No text annotation
IL_8T3C_174No text annotation
IL_8T3C_175Minor groove platform
IL_8T3C_176Minor groove platform
IL_8T3C_177SSU/LSU pseudoknot
IL_8T3C_178Single bulged U
IL_8T3C_182No text annotation
IL_8T3C_183No text annotation
IL_8T3C_184No text annotation
IL_8T3C_251No text annotation
IL_8T3C_252Isolated non-canonical cWW pair
IL_8T3C_185Tandem non-canonical cWW pairs
IL_8T3C_186No text annotation
IL_8T3C_187No text annotation
IL_8T3C_188Major groove platform; stack outside cWW
IL_8T3C_189Isolated non-canonical cWW pair
IL_8T3C_192Tandem non-canonical cWW pairs
IL_8T3C_193Kink-turn related
IL_8T3C_194Isolated cWH basepair
IL_8T3C_198Partly complementary
IL_8T3C_199Single bulged U
IL_8T3C_200No text annotation
IL_8T3C_202Single bulged G
IL_8T3C_203C-loop
IL_8T3C_205Minor groove platform
IL_8T3C_206Tandem non-canonical cWW pairs
IL_8T3C_207No text annotation
IL_8T3C_256No text annotation
IL_8T3C_208Tandem non-canonical cWW pairs
IL_8T3C_209Single bulged U
IL_8T3C_210Isolated cWS basepair
IL_8T3C_211No text annotation
IL_8T3C_212No text annotation
IL_8T3C_213Single bulged A
IL_8T3C_215Minor groove platform
IL_8T3C_257Isolated non-canonical cWW pair
IL_8T3C_216No text annotation
IL_8T3C_219Isolated non-canonical cWW pair
IL_8T3C_220No text annotation
IL_8T3C_221Single stack bend
IL_8T3C_224Tandem non-canonical cWW pairs
IL_8T3C_225No text annotation
IL_8T3C_233No text annotation
IL_8T3C_236Tandem non-canonical cWW pairs
IL_8T3C_237Triple sheared
IL_8T3C_238No text annotation
IL_8T3C_239No text annotation
IL_8T3C_240No text annotation
IL_8T3C_241No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8T3C_0011/A1/113:123,
1/A1/149:158,
1/A1/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_8T3C_0021/A1/113:124,
1/A1/144:158,
1/A1/263:267		No text annotation
J3_8T3C_0031/A1/185:189,
1/A1/205:214,
1/A1/226:231		No text annotation
homologous
J3_8C3A_046
NA
J3_8T3C_0041/A1/340:356,
1/A1/363:368,
1/A4/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8T3C_0441/A1/369:376,
1/A1/403:404,
1/A4/19:20		No text annotation
geometric
J3_5J7L_036
NA
J3_8T3C_0451/A1/369:379,
1/A1/390:404,
1/A4/19:20		No text annotation
homologous
J3_8CRE_006
NA
J3_8T3C_0071/A1/502:503,
1/A1/588:597,
1/A1/606:611		No text annotation
homologous
J3_8P9A_048
J3_86133.1
J3_8T3C_0081/A1/814:820,
1/A1/905:907,
1/A1/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_8T3C_0461/A1/829:831,
1/A1/863:867,
1/A1/892:895		No text annotation
homologous
J3_8CRE_010
NA
J3_8T3C_0101/A1/986:987,
1/A1/1062:1066,
1/A1/1092:1098		No text annotation
J3_8T3C_0121/A1/1479:1485,
1/A1/1857:1859,
1/A1/1871:1874		No text annotation
homologous
J3_8P9A_053
J3_05025.1
J3_8T3C_0131/A1/1488:1491,
1/A1/1837:1843,
1/A1/1852:1854		No text annotation
homologous
J3_8P9A_054
J3_76012.1
J3_8T3C_0141/A1/1526:1531,
1/A1/1591:1595,
1/A1/1612:1613		No text annotation
homologous
J3_8C3A_052
NA
J3_8T3C_0151/A1/1537:1542,
1/A1/1551:1561,
1/A1/1578:1584		No text annotation
J3_8T3C_0161/A1/1631:1632,
1/A1/1641:1645,
1/A1/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_8T3C_0171/A1/1654:1658,
1/A1/1791:1792,
1/A1/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8T3C_0181/A1/2432:2435,
1/A1/2512:2517,
1/A1/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_8T3C_0191/A1/2529:2532,
1/A1/2547:2563,
1/A1/2578:2581		No text annotation
homologous
J3_8C3A_009
NA
J3_8T3C_0201/A1/2651:2653,
1/A1/2754:2765,
1/A1/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_8T3C_0211/A1/2664:2666,
1/A1/2690:2692,
1/A1/2701:2706		No text annotation
homologous
J3_8P9A_062
J3_05327.1
J3_8T3C_0221/A1/2886:2889,
1/A1/2914:2916,
1/A1/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_8T3C_0231/A1/3171:3176,
1/A1/3212:3220,
1/A1/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_8T3C_0241/A1/3298:3300,
1/A1/3314:3318,
1/A1/3388:3390		No text annotation
homologous
J3_8P9A_065
J3_81015.1
J3_8T3C_0251/A3/9:15,
1/A3/65:67,
1/A3/111:112		No text annotation
J3_8T3C_0261/A4/44:45,
1/A4/58:64,
1/A4/96:100		No text annotation
homologous
J3_8P4V_024
NA
J3_8T3C_0271/B5/41:42,
1/B5/433:439,
1/B5/464:466		No text annotation
homologous
J3_8P9A_068
J3_58657.1
J3_8T3C_0291/B5/633:635,
1/B5/861:865,
1/B5/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_8T3C_0301/B5/633:635,
1/B5/861:866,
1/B5/962:966		No text annotation
homologous
J3_8C3A_034
NA
J3_8T3C_0321/B5/881:884,
1/B5/928:936,
1/B5/943:947		No text annotation
homologous
J3_8P9A_074
J3_23895.1
J3_8T3C_0331/B5/1037:1039,
1/B5/1079:1083,
1/B5/1090:1094		No text annotation
geometric
J3_4V88_034
NA
J3_8T3C_0351/B5/1168:1171,
1/B5/1468:1470,
1/B5/1574:1577		No text annotation
homologous
J3_8P9A_077
J3_44359.1
J3_8T3C_0361/B5/1180:1187,
1/B5/1198:1209,
1/B5/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_8T3C_0381/B5/1283:1288,
1/B5/1327:1332,
1/B5/1419:1424		No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_8T3C_0401/B5/1336:1338,
1/B5/1386:1389,
1/B5/1412:1415		No text annotation
geometric
J3_8C3A_043
NA
J3_8T3C_0411/B5/1336:1338,
1/B5/1386:1391,
1/B5/1407:1415		No text annotation
homologous
J3_8C3A_086
NA
J3_8T3C_0421/B5/1470:1474,
1/B5/1533:1540,
1/B5/1571:1574		No text annotation
J4_8T3C_0011/A1/112:113,
1/A1/267:272,
1/A1/293:299,
1/A1/316:319		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8T3C_0021/A1/185:189,
1/A1/205:208,
1/A1/212:214,
1/A1/226:231		No text annotation
homologous
J4_8C3A_002
NA
J4_8T3C_0121/A1/1451:1457,
1/A1/1475:1476,
1/A1/1877:1880,
1/A1/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_34212.1
J4_8T3C_0041/A1/1492:1496,
1/A1/1520:1525,
1/A1/1614:1615,
1/A1/1829:1836		No text annotation
homologous
J4_8C3A_004
NA
J4_8T3C_0051/A1/1674:1675,
1/A1/1693:1698,
1/A1/1747:1753,
1/A1/1772:1773		No text annotation
J4_8T3C_0061/A1/2130:2134,
1/A1/2146:2150,
1/A1/2186:2191,
1/A1/2317:2322		No text annotation
J4_8T3C_0131/A1/2192:2194,
1/A1/2248:2249,
1/A1/2267:2277,
1/A1/2307:2315		No text annotation
J4_8T3C_0081/A1/2654:2658,
1/A1/2712:2716,
1/A1/2740:2742,
1/A1/2751:2753		No text annotation
homologous
J4_8C3A_008
NA
J4_8T3C_0091/A1/3010:3012,
1/A1/3042:3043,
1/A1/3098:3100,
1/A1/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_37757.1
J4_8T3C_0101/B5/99:107,
1/B5/307:309,
1/B5/357:361,
1/B5/383:384		No text annotation
homologous
J4_8C3A_021
NA
J4_8T3C_0141/B5/622:624,
1/B5/975:980,
1/B5/1021:1032,
1/B5/1103:1104		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J5_8T3C_0011/A1/20:22,
1/A4/35:42,
1/A4/102:107,
1/A4/115:116,
1/A4/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_8T3C_0021/A1/658:663,
1/A1/799:802,
1/A1/941:944,
1/A1/1375:1376,
1/A1/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_8T3C_0031/A1/675:678,
1/A1/702:706,
1/A1/713:721,
1/A1/749:751,
1/A1/782:787		No text annotation
homologous
J5_8P9A_012
J5_56629.1
J5_8T3C_0041/A1/1906:1914,
1/A1/1938:1939,
1/A1/2109:2110,
1/A1/2114:2122,
1/A1/2331:2333		No text annotation
homologous
J5_8C3A_004
NA
J5_8T3C_0051/A1/2399:2406,
1/A1/2815:2823,
1/A1/2867:2876,
1/A1/2951:2957,
1/A1/2975:2980		No text annotation
J5_8T3C_0061/A1/2416:2419,
1/A1/2611:2614,
1/A1/2627:2628,
1/A1/2650:2651,
1/A1/2798:2804		No text annotation
homologous
J5_8C3A_006
NA
J5_8T3C_0091/B5/54:57,
1/B5/90:97,
1/B5/386:388,
1/B5/409:411,
1/B5/423:426		No text annotation
homologous
J5_8C3A_020
NA
J5_8T3C_0101/B5/123:143,
1/B5/172:182,
1/B5/203:204,
1/B5/263:265,
1/B5/289:294		No text annotation
J5_8T3C_0111/B5/123:143,
1/B5/172:182,
1/B5/203:204,
1/B5/263:267,
1/B5/288:294		No text annotation
J5_8T3C_0121/B5/635:641,
1/B5/693:702,
1/B5/736:744,
1/B5/807:817,
1/B5/854:861		No text annotation
J6_8T3C_0011/A1/22:27,
1/A1/58:68,
1/A1/75:79,
1/A1/106:110,
1/A1/321:331,
1/A4/32:35		No text annotation
J6_8T3C_0021/A1/2416:2419,
1/A1/2611:2614,
1/A1/2627:2628,
1/A1/2650:2653,
1/A1/2754:2765,
1/A1/2793:2804		No text annotation
J7_8T3C_0011/A1/949:956,
1/A1/965:968,
1/A1/1114:1117,
1/A1/1141:1146,
1/A1/1157:1161,
1/A1/1338:1339,
1/A1/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_8T3C_005No text annotation
J3_8T3C_006No text annotation
J3_8T3C_009No text annotation
J3_8T3C_011No text annotation
J3_8T3C_028No text annotation
J3_8T3C_031No text annotation
J3_8T3C_047No text annotation
J3_8T3C_034No text annotation
J3_8T3C_037No text annotation
J3_8T3C_039No text annotation
J3_8T3C_043No text annotation
J3_8T3C_048No text annotation
J4_8T3C_003No text annotation
J4_8T3C_007No text annotation
J4_8T3C_011No text annotation
J5_8T3C_007No text annotation
J5_8T3C_008No text annotation

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