HL_8T3C_026

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8T3C|1|A1|U|1241, 8T3C|1|A1|G|1243, 8T3C|1|A1|A|1245, 8T3C|1|A1|G|1246, 8T3C|1|A1|U|1247, 8T3C|1|A1|C|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|A1|C|1239
8T3C|1|A1|A|1240
8T3C|1|A1|U|1241
8T3C|1|A1|G|1242
8T3C|1|A1|G|1243
8T3C|1|A1|A|1244
8T3C|1|A1|A|1245
8T3C|1|A1|G|1246
8T3C|1|A1|U|1247
8T3C|1|A1|C|1248
8T3C|1|A1|G|1249

Current chains

Chain A1

25S rRNA

Nearby chains

Chain DC

Elongation factor 2