HL_8T3C_051

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

8T3C|1|A1|U|2537, 8T3C|1|A1|U|2542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3C_051 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3956

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8T3C|1|A1|A|2535
8T3C|1|A1|A|2536
8T3C|1|A1|U|2537
8T3C|1|A1|U|2538
8T3C|1|A1|C|2539
8T3C|1|A1|A|2540
8T3C|1|A1|U|2541
8T3C|1|A1|U|2542
8T3C|1|A1|U|2543
8T3C|1|A1|U|2544

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain Ag

60S ribosomal protein L34-A