HL_8T3C_079

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8T3C|1|B5|U|158, 8T3C|1|B5|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3C_079 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.319

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8T3C|1|B5|G|154
8T3C|1|B5|U|155
8T3C|1|B5|A|156
8T3C|1|B5|A|157
8T3C|1|B5|U|158
8T3C|1|B5|U|159
8T3C|1|B5|C|160

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BY

40S ribosomal protein S24-A