HL_8T3C_094

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAGG

Length

20 nucleotides

Bulged bases

8T3C|1|B5|U|828, 8T3C|1|B5|U|831, 8T3C|1|B5|U|833, 8T3C|1|B5|U|841

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|B5|C|827
8T3C|1|B5|U|828
8T3C|1|B5|A|829
8T3C|1|B5|U|830
8T3C|1|B5|U|831
8T3C|1|B5|U|832
8T3C|1|B5|U|833
8T3C|1|B5|G|834
8T3C|1|B5|U|835
8T3C|1|B5|U|836
8T3C|1|B5|G|837
8T3C|1|B5|G|838
8T3C|1|B5|U|839
8T3C|1|B5|U|840
8T3C|1|B5|U|841
8T3C|1|B5|C|842
8T3C|1|B5|U|843
8T3C|1|B5|A|844
8T3C|1|B5|G|845
8T3C|1|B5|G|846

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain BL

40S ribosomal protein S11-A