HL_8T3C_115

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CACUUUGGGCAAAGUAG

Length

17 nucleotides

Bulged bases

8T3C|1|EC|U|6904, 8T3C|1|EC|A|6914

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|EC|C|6899
8T3C|1|EC|A|6900
8T3C|1|EC|C|6901
8T3C|1|EC|U|6902
8T3C|1|EC|U|6903
8T3C|1|EC|U|6904
8T3C|1|EC|G|6905
8T3C|1|EC|G|6906
8T3C|1|EC|G|6907
8T3C|1|EC|C|6908
8T3C|1|EC|A|6909
8T3C|1|EC|A|6910
8T3C|1|EC|A|6911
8T3C|1|EC|G|6912
8T3C|1|EC|U|6913
8T3C|1|EC|A|6914
8T3C|1|EC|G|6915

Current chains

Chain EC

TSV IRES

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BP

RPS15 isoform 1

Chain BQ

40S ribosomal protein S16-A

Chain BS

40S ribosomal protein S18-A

Chain DC

Elongation factor 2