HL_8T3D_010

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_010 not in the Motif Atlas

Homologous match to HL_8P9A_122

Geometric discrepancy: 0.0816

The information below is about HL_8P9A_122

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8T3D|1|A1|A|357
8T3D|1|A1|G|358
8T3D|1|A1|U|359
8T3D|1|A1|G|360
8T3D|1|A1|A|361
8T3D|1|A1|U|362

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain Aj

60S ribosomal protein L37-A

Chain Al

60S ribosomal protein L39