HL_8T3D_014
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UCUUG(1MA)AACA
- Length
- 10 nucleotides
- Bulged bases
- 8T3D|1|A1|C|648
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3D_014 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.0815
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8T3D|1|A1|U|640
8T3D|1|A1|C|641
8T3D|1|A1|U|642
8T3D|1|A1|U|643
8T3D|1|A1|G|644
8T3D|1|A1|1MA|645
8T3D|1|A1|A|646
8T3D|1|A1|A|647
8T3D|1|A1|C|648
8T3D|1|A1|A|649
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain Aa
- 60S ribosomal protein L28
- Chain Ae
- RPL32 isoform 1
Coloring options: