HL_8T3D_019

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_019 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.2834

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8T3D|1|A1|G|844
8T3D|1|A1|G|845
8T3D|1|A1|A|846
8T3D|1|A1|A|847
8T3D|1|A1|A|848
8T3D|1|A1|C|849

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ap

60S ribosomal protein L43-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BN

40S ribosomal protein S13