HL_8T3D_023
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUUAAUUG
- Length
- 8 nucleotides
- Bulged bases
- 8T3D|1|A1|U|1081
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3D_023 not in the Motif Atlas
- Homologous match to HL_8C3A_024
- Geometric discrepancy: 0.1467
- The information below is about HL_8C3A_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8T3D|1|A1|C|1076
8T3D|1|A1|U|1077
8T3D|1|A1|U|1078
8T3D|1|A1|A|1079
8T3D|1|A1|A|1080
8T3D|1|A1|U|1081
8T3D|1|A1|U|1082
8T3D|1|A1|G|1083
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AD
- RPL5 isoform 1
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
Coloring options: