HL_8T3D_027

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

8T3D|1|A1|G|1268, 8T3D|1|A1|U|1269, 8T3D|1|A1|A|1270, 8T3D|1|A1|A|1271, 8T3D|1|A1|C|1272, 8T3D|1|A1|A|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|A1|G|1266
8T3D|1|A1|U|1267
8T3D|1|A1|G|1268
8T3D|1|A1|U|1269
8T3D|1|A1|A|1270
8T3D|1|A1|A|1271
8T3D|1|A1|C|1272
8T3D|1|A1|A|1273
8T3D|1|A1|A|1274
8T3D|1|A1|C|1275

Current chains

Chain A1

25S rRNA

Nearby chains

Chain DC

Elongation factor 2