HL_8T3D_031

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8T3D|1|A1|G|1507, 8T3D|1|A1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_031 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.3393

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8T3D|1|A1|A|1506
8T3D|1|A1|G|1507
8T3D|1|A1|C|1508
8T3D|1|A1|A|1509
8T3D|1|A1|G|1510
8T3D|1|A1|U|1511
8T3D|1|A1|U|1512

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Al

60S ribosomal protein L39