3D structure

PDB id
8T3D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.95 Å

Loop

Sequence
CGUUCAUAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T3D_059 not in the Motif Atlas
Homologous match to HL_8P9A_172
Geometric discrepancy: 0.1247
The information below is about HL_8P9A_172
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32735.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8T3D|1|A1|C|2840
8T3D|1|A1|G|2841
8T3D|1|A1|U|2842
8T3D|1|A1|U|2843
8T3D|1|A1|C|2844
8T3D|1|A1|A|2845
8T3D|1|A1|U|2846
8T3D|1|A1|A|2847
8T3D|1|A1|G|2848

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AI
60S ribosomal protein L10
Chain Am
Ubiquitin-60S ribosomal protein L40
Chain DC
Elongation factor 2

Coloring options:


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