HL_8T3D_059
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3D_059 not in the Motif Atlas
- Homologous match to HL_8P9A_172
- Geometric discrepancy: 0.1247
- The information below is about HL_8P9A_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_32735.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8T3D|1|A1|C|2840
8T3D|1|A1|G|2841
8T3D|1|A1|U|2842
8T3D|1|A1|U|2843
8T3D|1|A1|C|2844
8T3D|1|A1|A|2845
8T3D|1|A1|U|2846
8T3D|1|A1|A|2847
8T3D|1|A1|G|2848
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AI
- 60S ribosomal protein L10
- Chain Am
- Ubiquitin-60S ribosomal protein L40
- Chain DC
- Elongation factor 2
Coloring options: