HL_8T3D_059

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_059 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.1247

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T3D|1|A1|C|2840
8T3D|1|A1|G|2841
8T3D|1|A1|U|2842
8T3D|1|A1|U|2843
8T3D|1|A1|C|2844
8T3D|1|A1|A|2845
8T3D|1|A1|U|2846
8T3D|1|A1|A|2847
8T3D|1|A1|G|2848

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain DC

Elongation factor 2